PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00111013001 | ||||||||
Common Name | GSBRNA2T00111013001, LOC106452547 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 172aa MW: 18692.4 Da PI: 7.0967 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.5 | 5.2e-39 | 11 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+l+r+C++ C++ap+f ++++ +fa vhk+FGasnv+kll+++pee+r+++++sl+yeA++r++dPvyG++g i +lq+++ +l GSBRNA2T00111013001 11 SCAACKLLKRRCTPTCIFAPHFRSSDQITFAKVHKVFGASNVSKLLSEVPEEQRQETVNSLAYEADVRLKDPVYGCIGAIASLQKKMLEL 100 6***************************************************************************************** PP DUF260 91 kaelallkee 100 ++++a+++++ GSBRNA2T00111013001 101 QHDIAVARNR 110 *****99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.5 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.5E-38 | 11 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MRGHEPRSSS SCAACKLLKR RCTPTCIFAP HFRSSDQITF AKVHKVFGAS NVSKLLSEVP 60 EEQRQETVNS LAYEADVRLK DPVYGCIGAI ASLQKKMLEL QHDIAVARNR LLAHNAAGGV 120 NNNNSHVLLS PLDDSPQLAA FLDLVPYSDL MLLDGSGLDA YLFDIGQPPF V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-39 | 6 | 120 | 6 | 122 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-39 | 6 | 120 | 6 | 122 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00111013001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473845 | 1e-132 | AB473845.1 Arabidopsis thaliana ASL12 mRNA for ASYMMETRIC LEAVES2-like 12 protein, complete cds. | |||
GenBank | AC073395 | 1e-132 | AC073395.6 Arabidopsis thaliana chromosome 3 BAC F11B9 genomic sequence, complete sequence. | |||
GenBank | AC254608 | 1e-132 | AC254608.1 Capsella rubella clone CAP16-D12, complete sequence. | |||
GenBank | ATAC009991 | 1e-132 | AC009991.5 Arabidopsis thaliana chromosome III BAC F9F8 genomic sequence, complete sequence. | |||
GenBank | CP002686 | 1e-132 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013587709.1 | 1e-124 | PREDICTED: LOB domain-containing protein 21 | ||||
Refseq | XP_013750153.1 | 1e-124 | LOB domain-containing protein 21 | ||||
Swissprot | Q9SRL8 | 1e-105 | LBD21_ARATH; LOB domain-containing protein 21 | ||||
TrEMBL | A0A0D3CLA0 | 1e-123 | A0A0D3CLA0_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6FMH5 | 1e-123 | A0A3P6FMH5_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g136860.1 | 1e-124 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10255 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11090.1 | 2e-92 | LOB domain-containing protein 21 |
Link Out ? help Back to Top | |
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Entrez Gene | 106452547 |
Publications ? help Back to Top | |||
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