PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00109745001 | ||||||||
Common Name | GSBRNA2T00109745001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 433aa MW: 48497.5 Da PI: 6.9416 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.6 | 7.1e-51 | 13 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lp+G+rF+Ptdeelv +yL++k++g++ ++ ++i+e+di+k+ePwdLp +++k++++ew fFs+ d+ky+tg+r+nr+t +g Wkatgk GSBRNA2T00109745001 13 LPVGLRFRPTDEELVRYYLRRKINGHDDDV-KAIREIDICKCEPWDLPdfSAIKTKDSEWLFFSPLDRKYPTGSRQNRSTIAGHWKATGK 101 799************************999.89**************96448899999******************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d++++s k++++glk+tLvf++grapkg++t+Wvmheyr+ GSBRNA2T00109745001 102 DRKIKSGKNNVIGLKRTLVFHSGRAPKGTRTNWVMHEYRA 141 ******99******************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.79E-56 | 11 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.975 | 13 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.1E-24 | 14 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MNQNIKELSL DSLPVGLRFR PTDEELVRYY LRRKINGHDD DVKAIREIDI CKCEPWDLPD 60 FSAIKTKDSE WLFFSPLDRK YPTGSRQNRS TIAGHWKATG KDRKIKSGKN NVIGLKRTLV 120 FHSGRAPKGT RTNWVMHEYR ATEHDLSGTN PGQNPFVICK LFKKQDPSLV DEAVSSPTSS 180 PDETKVVVEA QGVKPESSLV ISGDSRNGVW NEATTSKLGD LDWLSFPELE SLTVFSPLHE 240 LGSSSSSFNA FLQPSSSDHD NTFQIQTQYG TNEEDTDVSR FLNSVLDFQD DLEDQDFVFP 300 SEFDGAVPDQ TAPAYQQQRS AGDMSDDVSR TGIKLQPRRE QPEGCSTDYI IHGNASRRLR 360 LQTIKREVED TDGKAIKKGK LMRSKNRTGF LFKKIISVRC SYGGLLRAAV VAVLFLISVC 420 SLTADFRASL MI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-46 | 3 | 165 | 10 | 169 | NAC domain-containing protein 19 |
3swm_B | 3e-46 | 3 | 165 | 10 | 169 | NAC domain-containing protein 19 |
3swm_C | 3e-46 | 3 | 165 | 10 | 169 | NAC domain-containing protein 19 |
3swm_D | 3e-46 | 3 | 165 | 10 | 169 | NAC domain-containing protein 19 |
3swp_A | 3e-46 | 3 | 165 | 10 | 169 | NAC domain-containing protein 19 |
3swp_B | 3e-46 | 3 | 165 | 10 | 169 | NAC domain-containing protein 19 |
3swp_C | 3e-46 | 3 | 165 | 10 | 169 | NAC domain-containing protein 19 |
3swp_D | 3e-46 | 3 | 165 | 10 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.6726 | 0.0 | seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves and stems. {ECO:0000269|PubMed:17158162}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:20156199, PubMed:19947982). Transcriptional activator involved in response to cold stress. Mediates induction of pathogenesis-related (PR) genes independently of salicylic signaling in response to cold. Binds directly to the PR gene promoters and enhances plant resistance to pathogen infection, incorporating cold signals into pathogen resistance responses (PubMed:19947982). Plays a regulatory role in abscisic acid (ABA)-mediated drought-resistance response (PubMed:22967043). {ECO:0000269|PubMed:19947982, ECO:0000269|PubMed:20156199, ECO:0000269|PubMed:22967043}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00109745001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt, drought stress, abscisic acid (ABA), salicylic acid (SA) and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP641354 | 0.0 | KP641354.1 Brassica napus NAC transcription factor 62-2.1 (NAC62-2.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009150140.1 | 0.0 | PREDICTED: NAC domain-containing protein 62-like | ||||
Swissprot | Q9SCK6 | 0.0 | NAC62_ARATH; NAC domain-containing protein 62 | ||||
TrEMBL | M4DSV6 | 0.0 | M4DSV6_BRARP; Uncharacterized protein | ||||
STRING | Bra019599.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2416 | 28 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49530.1 | 0.0 | NAC domain containing protein 62 |
Publications ? help Back to Top | |||
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