PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00108914001 | ||||||||
Common Name | GSBRNA2T00108914001, LOC106439870 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | AP2 | ||||||||
Protein Properties | Length: 345aa MW: 38334 Da PI: 9.8413 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.1 | 9.3e-18 | 117 | 166 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta+ Aa+a+++a+ k++g GSBRNA2T00108914001 117 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAYAAARAYDRAAIKFRG 166 78*******************......55************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.9E-9 | 117 | 166 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-15 | 117 | 174 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.9E-30 | 118 | 180 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-16 | 118 | 174 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.332 | 118 | 174 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.89E-11 | 118 | 173 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MLDLSLGMFS NYGEDQDRKV PFVSTAGDEE YNISSSSSKD SVAGKDFITF GILKRDDDVV 60 PPPPPSRETG DLFPVADARR NIEFAADDGH WLRLSSLQRN KQQVAKKSRR GPRSRSSQYR 120 GVTFYRRTGR WESHIWDCGK QVYLGGFDTA YAAARAYDRA AIKFRGLDAD INFVVEDYKQ 180 DLDKMKNLNK VEFVQTLRRE SASFGRGSSK YKGLTLQKCT QLKTHHDQIH LFQNRGWDAA 240 AIKYNNELGK GGVMKSGAPI KGNIHNDLEL SLGISSSSQN IKLTTSDYYK GINHSTMGLF 300 GKHSPIYLPV TTMNPLKTVA ASSGFPFITM TTSSSSSMST SFDP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Repressor of flowering. {ECO:0000250, ECO:0000269|PubMed:14573523}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00075 | ChIP-chip | Transfer from AT3G54990 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00108914001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172 after photoperiod changement. {ECO:0000269|PubMed:14573523}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013736859.1 | 0.0 | AP2-like ethylene-responsive transcription factor SMZ | ||||
Swissprot | Q6PV68 | 1e-153 | SMZ_ARATH; AP2-like ethylene-responsive transcription factor SMZ | ||||
TrEMBL | A0A3P6GUV2 | 0.0 | A0A3P6GUV2_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g087280.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10858 | 18 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54990.1 | 1e-148 | AP2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106439870 |
Publications ? help Back to Top | |||
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