PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00107118001 | ||||||||
Common Name | GSBRNA2T00107118001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARR-B | ||||||||
Protein Properties | Length: 600aa MW: 67781.1 Da PI: 5.342 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 74.1 | 2e-23 | 230 | 283 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k ++ Wt +LH+ F++a++++ G +kA+Pk+ile+m+v Lt+e+v+SHLQkYR GSBRNA2T00107118001 230 KSKITWTDDLHDLFLQAIRHI-GLDKAVPKKILEFMNVSYLTRENVASHLQKYRQ 283 6799*****************.********************************5 PP | |||||||
2 | Response_reg | 72.6 | 1.6e-24 | 18 | 134 | 1 | 110 |
EEEESSSHHHHHHHHHHHHHTTC.....EEEE..EESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTT CS Response_reg 1 vlivdDeplvrellrqalekegy.....eeva..eaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahg 81 v++vdD+p++++++ + le+ +y +e++ +++d++eal +lk ++ +Dli++D mp+m+Gl+l k+i++e +lp+iv+++ GSBRNA2T00107118001 18 VMVVDDDPVFLQIMSRRLENLKYrdpstMEITviAVKDSREALSTLKIERnnIDLIVTDYYMPDMNGLQLKKQITQEFGNLPVIVMSSDT 107 89*****************766644444333335999*******99555555************************99*********777 PP THHHHHHHHHTTESEEEESS--HHHHHHH CS Response_reg 82 eeedalealkaGakdflsKpfdpeelvka 110 + +e l Ga++f+ Kp++ el+k GSBRNA2T00107118001 108 N--KEHESLTCGAMGFIQKPINATELTKI 134 6..7799******************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 6.0E-28 | 15 | 142 | No hit | No description |
SuperFamily | SSF52172 | 6.26E-26 | 16 | 144 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 3.5E-22 | 16 | 135 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 33.872 | 17 | 139 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 9.7E-22 | 18 | 135 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 5.93E-25 | 19 | 139 | No hit | No description |
PROSITE profile | PS51294 | 9.307 | 227 | 286 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.02E-17 | 229 | 287 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.2E-23 | 229 | 287 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.8E-26 | 230 | 283 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-5 | 234 | 282 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 600 aa Download sequence Send to blast |
MAFAQVFYNQ SSVLRINVMV VDDDPVFLQI MSRRLENLKY RDPSTMEITV IAVKDSREAL 60 STLKIERNNI DLIVTDYYMP DMNGLQLKKQ ITQEFGNLPV IVMSSDTNKE HESLTCGAMG 120 FIQKPINATE LTKIYQLALT CKRNGKSTLW TENNHNDTDV SISQQIQLVP EQDNLMMTKK 180 KKFSPRPDAR SMNSSNGTCV STDASRKNKK RKANGGSGDD FESLSQPSMK SKITWTDDLH 240 DLFLQAIRHI GLDKAVPKKI LEFMNVSYLT RENVASHLQK YRQFLRKVAE RSSLCSNMLP 300 SNGIDSIYPY PHTREPYYNN YTSSSSSWYG TSLNNRSFYS KPGHGLGQSR LLSNTSDPVC 360 FSQMPHSYMN HNLNYSSQNE GRRSFLEPTA NKTSQTSQAL GFEQHGLSAI NGSGFNNNTL 420 ISYGSLTTHQ PGSSNFSYGL QSFLNNENTA YEPQPHPHAQ AAAQKNIEIP QQENLSLFDE 480 LGNINELLCD ISNFELDHNK QQEAVSTNQF ELPANVSTEM NQFFSLEDDD WTFVNTNQGH 540 SNGETTNNVA PETNSQTFNM STNHNQEQDA QDFVDWSFLN PEDLANEYDF MDSLFNGMN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-18 | 230 | 289 | 5 | 64 | ARR10-B |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mainly expressed in siliques. Also found in germinating seedlings, stems, flowers and roots, but not in rosette leaves. {ECO:0000269|PubMed:15173562, ECO:0000269|Ref.3}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00107118001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189195 | 0.0 | AC189195.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB004B12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013610469.1 | 0.0 | PREDICTED: putative two-component response regulator ARR21 | ||||
Refseq | XP_013746784.1 | 0.0 | putative two-component response regulator ARR21 | ||||
Swissprot | Q9LYP5 | 0.0 | ARR21_ARATH; Putative two-component response regulator ARR21 | ||||
TrEMBL | A0A397XT24 | 0.0 | A0A397XT24_BRACM; Uncharacterized protein | ||||
STRING | XP_006399202.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6113 | 17 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07210.1 | 0.0 | response regulator 21 |
Publications ? help Back to Top | |||
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