PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00104250001 | ||||||||
Common Name | GSBRNA2T00104250001, LOC106373556 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 139aa MW: 15723.7 Da PI: 5.8462 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 30.5 | 1.1e-09 | 59 | 114 | 1 | 49 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpk 49 lp+G++F+Ptd+e++ e+L+ kv+++ ++++ +i+ +i++++P++Lp GSBRNA2T00104250001 59 LPAGVKFDPTDQEVL-EHLEGKVRDDArklhplIDEFIrTIDGEnGICYTHPEKLPG 114 799**********99.99******9996665442222223554445*********94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.06E-9 | 52 | 116 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 10.216 | 59 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MTWCNDRSDV QTVERIIPSP TAAESPAASF QVSSHKTCPS CGHKFKFHEQ AGIHDLPGLP 60 AGVKFDPTDQ EVLEHLEGKV RDDARKLHPL IDEFIRTIDG ENGICYTHPE KLPGYFMLFL 120 PRYYNPINNY SLLFNTEY* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00104250001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ056658 | 1e-108 | DQ056658.1 Arabidopsis thaliana no apical meristem family protein (At4g28500) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013669171.1 | 1e-101 | NAC domain-containing protein 73-like | ||||
Swissprot | O49459 | 3e-75 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A078HNI9 | 5e-79 | A0A078HNI9_BRANA; BnaC01g09920D protein | ||||
STRING | Bo1g017410.1 | 9e-78 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM21083 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-68 | NAC domain containing protein 73 |
Link Out ? help Back to Top | |
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Entrez Gene | 106373556 |
Publications ? help Back to Top | |||
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