PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00102095001

Common Name

GSBRNA2T00102095001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HSF

Protein Properties

Length: 385aa MW: 43739.1 Da PI: 4.5543

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00102095001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	105.7	3.8e-33	21	113	2	102
HHHHHHHHHCTGGGTTTSEESSSS.SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkeliswseng.nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 Fl+k ye+++d++++++isws+ng nsfv++d++ f+ ++LpkyFkhsn++SF+RQLn+YgF+kv+ ++ eF++++F +g+ GSBRNA2T00102095001 21 FLRKCYEMVDDSSTDSIISWSTNGdNSFVISDTTVFSAQLLPKYFKHSNLSSFIRQLNIYGFRKVDADR---------CEFANDWFVRGQ 101 9******************77769*************************************99.........67****** PP XXXXXXXXXXXX CS HSF_DNA-bind 91 kellekikrkks 102 kell+++ r+k+ GSBRNA2T00102095001 102 KELLKNVIRRKN 113 ****999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	6.4E-34	12	106	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	7.89E-31	16	111	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	6.3E-53	17	111	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.6E-19	21	44	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	5.5E-28	21	111	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.6E-19	60	72	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	61	85	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.6E-19	73	85	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MVKSSSDRVD SSSPSSSVAP FLRKCYEMVD DSSTDSIISW STNGDNSFVI SDTTVFSAQL 60 LPKYFKHSNL SSFIRQLNIY GFRKVDADRC EFANDWFVRG QKELLKNVIR RKNVQSTSEH 120 QSKTTTTTDA SQEEKSGESE LWKEVDILKG DKKALAQELV KVRQYQESTD TKMLHLEDRV 180 QGMEESQQEM LSFLVMVMQN PSLLVQLLQP KENNWRKAEG GGAKILEEVT DEGETNSKGL 240 PLVTYQAPSE GTTKSSSNEM NDFLRNADML KFCLDENRVP LIIPDLYDDG AWEKLLLLSP 300 SKKKKNKMQE KNVKKGIDDV TLEEKEEDED GGRMELDKSL ALELIEEEME KADDFDFDIG 360 QLTPERSKNL EILTQHMRLL ASDQ*

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MVKSSSDRVD SSSPSSSVAP FLRKCYEMVD DSSTDSIISW STNGDNSFVI SDTTVFSAQL  60
LPKYFKHSNL SSFIRQLNIY GFRKVDADRC EFANDWFVRG QKELLKNVIR RKNVQSTSEH  120
QSKTTTTTDA SQEEKSGESE LWKEVDILKG DKKALAQELV KVRQYQESTD TKMLHLEDRV  180
QGMEESQQEM LSFLVMVMQN PSLLVQLLQP KENNWRKAEG GGAKILEEVT DEGETNSKGL  240
PLVTYQAPSE GTTKSSSNEM NDFLRNADML KFCLDENRVP LIIPDLYDDG AWEKLLLLSP  300
SKKKKNKMQE KNVKKGIDDV TLEEKEEDED GGRMELDKSL ALELIEEEME KADDFDFDIG  360
QLTPERSKNL EILTQHMRLL ASDQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-24	11	111	19	129	Heat shock factor protein 1
5d5v_B	1e-24	11	111	19	129	Heat shock factor protein 1
5d5v_D	1e-24	11	111	19	129	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00102095001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232449	0.0	AC232449.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB008G18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009105347.1	0.0	PREDICTED: heat stress transcription factor A-8
Swissprot	Q9S7U5	0.0	HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBL	A0A397YRY5	0.0	A0A397YRY5_BRACM; Uncharacterized protein
STRING	Bra004272.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7045	26	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67970.1	1e-174	heat shock transcription factor A8

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]