PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00098895001
Common NameGSBRNA2T00098895001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 323aa    MW: 35585.5 Da    PI: 7.0823
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00098895001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.4e-09187234455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++iN ++  L+el+P +    +k    a +L + +++++sLq
  GSBRNA2T00098895001 187 SHSLAERARREKINARMKLLQELVPGC----DKIQGTALVLDEIINHVQSLQ 234
                          8*************************9....889****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-15181252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.54E-9181238No hitNo description
Gene3DG3DSA:4.10.280.103.0E-15183251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.684183233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-6187234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-8189239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MDLTGEFGAR SDRGERCREV TGLESLHLGD EFRQLALPPE NTGGFTALLE LPPTQAVNLL  60
RFTDSPSSSS QAAAVTGIAP TPPLHSYGTL TFPSNSLLME RAARFSTEHQ QNGNVSGTSS  120
VPSNSSVKTE PAETDSSQAV NSRSGKRKDS DKKAKSSTKK KKNKSSEENE KLPYVHVRAR  180
RGQATDSHSL AERARREKIN ARMKLLQELV PGCDKIQGTA LVLDEIINHV QSLQRQVEML  240
SMRLASVNPR IDFNLDTILA SENGSLMDGS FNGTAMQVAW PHQVTETEQS YHHRQLQQPQ  300
QWPFDGLNQR AWGKEEDQDH GQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145161KRKDSDKKAKSSTKKKK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00098895001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527280.0AK352728.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-C12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104076.20.0PREDICTED: transcription factor bHLH60-like
SwissprotQ3EAI11e-160BH060_ARATH; Transcription factor bHLH60
TrEMBLA0A397YWR00.0A0A397YWR0_BRACM; Uncharacterized protein
STRINGBra003300.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25762771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.21e-147bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]