PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00097456001

Common Name

GSBRNA2T00097456001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GeBP

Protein Properties

Length: 406aa MW: 44702.7 Da PI: 4.5297

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00097456001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	118.5	3.7e-37	119	218	2	98
DUF573 2 lfqrlwseeDeivlLqGlidf.kaktgk.spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqki 88 lfqrlw++eDei lL+G++d+ ++++g s++ d+ fye++k++++++++k+qlveK+rrLKkK+++ ++k++sgke+ f+++hdq++ GSBRNA2T00097456001 119 LFQRLWTDEDEIELLRGFLDYvATHRGGnSSHPpDTAPFYEMIKSKLQLEFNKNQLVEKLRRLKKKYRNVMSKISSGKEVFFKSPHDQST 208 79*****************7666776355558**************************************************** PP DUF573 89 felskkiWgs 98 fe+s+kiW++ GSBRNA2T00097456001 209 FEISRKIWNQ 218 ******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.7E-33	120	217	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MTSDQRDVVF SLESPDLEEG AAGDGGESDT DENDDVAIPE TNEEPEDDDP EEEDLTAVTV 60 TVSASSTDAV TVALPAGSAV PVSVIPVDSS DPKWHRVTEI VHHQRPLPPP TPIDDSRRLF 120 QRLWTDEDEI ELLRGFLDYV ATHRGGNSSH PPDTAPFYEM IKSKLQLEFN KNQLVEKLRR 180 LKKKYRNVMS KISSGKEVFF KSPHDQSTFE ISRKIWNQTG KIIGFEDNNA MDFEETNTNG 240 NYFNSPGGLN PSNVEIDSEN GVERRLMMSS SSGGSRKRSR SRIGKIEEDN KPIITPSEGQ 300 TPNAASNVNL NEPATAVVGG NIGVLIEETV KNCVSPVIKE MMNGTTSMMM AAMGGGGNGG 360 NKAVSDERWR KQQILELEVY SRRLELVQEQ IRATLHELKT MPSGV*

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MTSDQRDVVF SLESPDLEEG AAGDGGESDT DENDDVAIPE TNEEPEDDDP EEEDLTAVTV  60
TVSASSTDAV TVALPAGSAV PVSVIPVDSS DPKWHRVTEI VHHQRPLPPP TPIDDSRRLF  120
QRLWTDEDEI ELLRGFLDYV ATHRGGNSSH PPDTAPFYEM IKSKLQLEFN KNQLVEKLRR  180
LKKKYRNVMS KISSGKEVFF KSPHDQSTFE ISRKIWNQTG KIIGFEDNNA MDFEETNTNG  240
NYFNSPGGLN PSNVEIDSEN GVERRLMMSS SSGGSRKRSR SRIGKIEEDN KPIITPSEGQ  300
TPNAASNVNL NEPATAVVGG NIGVLIEETV KNCVSPVIKE MMNGTTSMMM AAMGGGGNGG  360
NKAVSDERWR KQQILELEVY SRRLELVQEQ IRATLHELKT MPSGV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	276	281	KRSRSR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00097456001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009124212.1	0.0	PREDICTED: probable transcription factor At3g04930
Refseq	XP_013750762.1	0.0	probable transcription factor At3g04930
Swissprot	Q9CAV7	0.0	STKLJ_ARATH; Probable transcription factor At3g04930
TrEMBL	A0A078ILF1	0.0	A0A078ILF1_BRANA; BnaAnng10740D protein
STRING	Bra040416.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3098	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.1	1e-133	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]