PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00095550001 | ||||||||
Common Name | GSBRNA2T00095550001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 492aa MW: 55663.2 Da PI: 6.7008 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 60.4 | 2.1e-19 | 97 | 140 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en+ rq tf+kR+ngilKKA+ELS+LCd++ +++fs+ gk GSBRNA2T00095550001 97 KLENTNGRQATFAKRKNGILKKANELSILCDIDLILLMFSPGGK 140 6799************************************9986 PP | |||||||
2 | K-box | 13.8 | 2.4e-06 | 196 | 272 | 9 | 86 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLs.lkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 +++++e l+++++ L+++i+++ R + +L++++ + +L qLe + +sl + R++K++l +q + +q + + GSBRNA2T00095550001 196 SSNSTTEDLSTQASILQARISEIHG--RLSYWTELDKINnVDHLGQLEISVRQSLDQLRAHKEHLGQQQQQAMQLENAN 272 4667788888888888888888876..5788999*99963889**********************99999999976655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.1E-28 | 88 | 147 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.605 | 88 | 140 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.93E-23 | 89 | 171 | No hit | No description |
SuperFamily | SSF55455 | 1.7E-24 | 89 | 180 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-16 | 90 | 110 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.9E-18 | 98 | 141 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-16 | 110 | 125 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-16 | 125 | 146 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 492 aa Download sequence Send to blast |
MEIYGGDEKS RARSEEPESL DGGDGSSTER GVYSESFLRV DVEVVEIDKF LTEENSSVGS 60 FSGETFGSHG GEIRFNLFKG KMSCYNRMGR VKLKIKKLEN TNGRQATFAK RKNGILKKAN 120 ELSILCDIDL ILLMFSPGGK PSLCCGRRSS IEEVIAKFSQ VTPEERTKKK VESLETLKKT 180 FLKLDHTVNI RELIASSNST TEDLSTQASI LQARISEIHG RLSYWTELDK INNVDHLGQL 240 EISVRQSLDQ LRAHKEHLGQ QQQQAMQLEN ANFVKDWSTC SLQDGIEIPL EQQLQSMSWI 300 LNSDNTTNII TEEHNPIPKR EVECSASSSF GSYPGYFGTG KSSETSFLDE LNTTNGDIKP 360 QLCTNNNIIP YNSNIMQNDI KHHQTYPPPL PHPPVFNLPS NQREYHMNGF FEAPPQPNGT 420 STYNNNNHNQ ARFGSSSSSL PCSISMLDEY LFSQVKKTRK RHSFFSQRSN TFLFPYFNRC 480 SNRTERERFD E* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.28420 | 0.0 | flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00095550001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ446459 | 0.0 | DQ446459.1 Arabidopsis thaliana clone pENTR221-At2g03060 MADS-box family protein (At2g03060) mRNA, complete cds. | |||
GenBank | DQ652954 | 0.0 | DQ652954.1 Arabidopsis thaliana clone 0000017365_0000012150 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013612004.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL14 isoform X3 | ||||
Refseq | XP_013713121.1 | 0.0 | agamous-like MADS-box protein AGL30 isoform X3 | ||||
Refseq | XP_013713122.1 | 0.0 | agamous-like MADS-box protein AGL30 isoform X4 | ||||
Swissprot | Q1PFA4 | 0.0 | AGL30_ARATH; Agamous-like MADS-box protein AGL30 | ||||
TrEMBL | A0A078FXE9 | 0.0 | A0A078FXE9_BRANA; BnaC09g21150D protein | ||||
STRING | Bo9g072860.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8754 | 25 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03060.2 | 1e-165 | AGAMOUS-like 30 |
Publications ? help Back to Top | |||
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