PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00094284001

Common Name

GSBRNA2T00094284001, LOC106370149

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 93aa MW: 10656.1 Da PI: 8.2389

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00094284001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.5	3.6e-06	22	59	18	54
HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54 + ++L +llP+ + + +s K+s + +L+++++YI++L GSBRNA2T00094284001 22 DLVSKLCQLLPEiRERRRSDKVSASKVLQETCNYIRKL 59 55678999999998899*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.331	4	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.2E-7	19	74	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.62E-7	22	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 93 aa Download sequence Send to blast
MSNRRSRQSS SALRISDDQM IDLVSKLCQL LPEIRERRRS DKVSASKVLQ ETCNYIRKLH 60 REVDNLSDRL SQLLDAVDED SHEASVIRSL LM*

Functional Description ? help Back to Top
Source	Description
UniProt	Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269\|PubMed:16527868}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00094284001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT024640	1e-85	BT024640.1 Arabidopsis thaliana unknown protein (At3g28857) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009129354.1	2e-57	PREDICTED: transcription factor PRE5-like
Refseq	XP_013665664.1	2e-57	transcription factor PRE5
Swissprot	Q9LJX1	3e-51	PRE5_ARATH; Transcription factor PRE5
TrEMBL	A0A078JT55	4e-56	A0A078JT55_BRANA; BnaA02g36990D protein
TrEMBL	A0A398AHH5	4e-56	A0A398AHH5_BRACM; Uncharacterized protein
TrEMBL	M4EW79	4e-56	M4EW79_BRARP; Uncharacterized protein
STRING	Bra033063.1-P	6e-57	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM259	28	225

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28857.1	1e-53	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	106370149

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]