PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00093566001 | ||||||||
Common Name | GSBRNA2T00093566001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 335aa MW: 38057.6 Da PI: 6.7457 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.8 | 7.2e-12 | 157 | 203 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L l+P + kK++Ka++L A ++Ik+Lq GSBRNA2T00093566001 157 DHIIAERKRREKLTQRFVALSALVPGL-----KKMDKASVLGDAQKHIKYLQ 203 699************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.85 | 153 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-9 | 157 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.4E-16 | 157 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.91E-11 | 158 | 206 | No hit | No description |
SuperFamily | SSF47459 | 2.88E-16 | 158 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-13 | 159 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MNMFSTRLFS DQELEENGII QQYGMNTIMG EIHEAHHTLS HSFPTRMLTT NDPSYDDLID 60 MKPSKILETT YISPKLQPPL SFPIPPYSKP HFHHQPSSKI LSFENATQNV MDYELSPTYQ 120 NSIFSPEVEA EVPPNWMNGK GAKRAQPLYK SQSNAQDHII AERKRREKLT QRFVALSALV 180 PGLKKMDKAS VLGDAQKHIK YLQEKVGEFE EQKRERRLES MVLVKKSKLI LDDNNQSSSS 240 SCCEDDSSTL DLPEIEVKFS DKDVLIKILC EKQKGHVAKI MAEVEKFHFS ITNSSVLPFG 300 PTLDITIIAK KESDFDMTLM DVVKSLRSAL SKFM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 161 | 166 | ERKRRE |
2 | 162 | 167 | RKRREK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00093566001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF488567 | 0.0 | AF488567.1 Arabidopsis thaliana clone bHLH025 putative bHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022555726.1 | 0.0 | transcription factor bHLH25-like | ||||
Swissprot | Q9T072 | 1e-171 | BH025_ARATH; Transcription factor bHLH25 | ||||
TrEMBL | A0A078IKT0 | 0.0 | A0A078IKT0_BRANA; BnaC03g61210D protein | ||||
STRING | Bra010617.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM492 | 27 | 146 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 1e-167 | bHLH family protein |
Publications ? help Back to Top | |||
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