PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00092034001 | ||||||||
Common Name | GSBRNA2T00092034001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 163aa MW: 18275.6 Da PI: 9.7038 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.7 | 4.8e-19 | 73 | 126 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ q+++Le+ Fe ++++ e++ +LA++lgL+ rqV +WFqNrRa++k GSBRNA2T00092034001 73 KKRRLSVVQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWK 126 55689999*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 126.8 | 9.3e-41 | 72 | 161 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekkrrls qvk+LE++Fe ++kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlE+dy +Lk+++d+lk+++++L+++++ L +e GSBRNA2T00092034001 72 EKKRRLSVVQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQLERDYGVLKSNFDSLKRSRDSLQRDNDYLLAE 161 69**********************************************************************************999866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.55E-20 | 66 | 130 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.248 | 68 | 128 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.4E-18 | 71 | 132 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.0E-16 | 73 | 126 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.64E-17 | 73 | 129 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-20 | 75 | 135 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 2.9E-6 | 99 | 108 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 103 | 126 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.9E-6 | 108 | 124 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 9.9E-14 | 128 | 162 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MKRSRGSSDS LSGFLPICHS TADKQLSPRP TATGFLYPGS AGDYSQMFDG LEEDGSLEDI 60 GVGHASSTAA AEKKRRLSVV QVKALEKNFE IDNKLEPERK VKLAQELGLQ PRQVAIWFQN 120 RRARWKTKQL ERDYGVLKSN FDSLKRSRDS LQRDNDYLLA EV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 120 | 128 | RRARWKTKQ |
2 | 141 | 146 | DSLKRS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.21333 | 1e-157 | flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Localized primarily to the hypocotyl of germinating seedlings. {ECO:0000269|PubMed:12678559}. | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment. Binds to the DNA sequence 5'-CAATNATTG-3'. {ECO:0000269|PubMed:12678559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00092034001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:12678559, ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353247 | 1e-169 | AK353247.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-23-D07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013674542.1 | 1e-115 | homeobox-leucine zipper protein ATHB-5-like | ||||
Refseq | XP_013678431.1 | 1e-115 | homeobox-leucine zipper protein ATHB-5 | ||||
Swissprot | P46667 | 6e-97 | ATHB5_ARATH; Homeobox-leucine zipper protein ATHB-5 | ||||
TrEMBL | A0A078H8T3 | 1e-113 | A0A078H8T3_BRANA; BnaC02g43700D protein | ||||
TrEMBL | A0A078IG20 | 1e-115 | A0A078IG20_BRANA; BnaA08g04720D protein | ||||
STRING | Bra031866.1-P | 1e-112 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12986 | 15 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65310.1 | 3e-99 | homeobox protein 5 |
Publications ? help Back to Top | |||
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