PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00091444001 | ||||||||
Common Name | GSBRNA2T00091444001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 218aa MW: 24331.7 Da PI: 8.9139 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.8 | 9.2e-06 | 46 | 68 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cg+ F++ L H+++H GSBRNA2T00091444001 46 YTCSFCGREFKSAQALGGHMNVH 68 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.54E-7 | 43 | 72 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.6E-4 | 44 | 70 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.3E-6 | 46 | 69 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0011 | 46 | 68 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.154 | 46 | 73 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 48 | 68 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MERDKCFMSM KFKPVVSRQS SDAALIWPFG EAYGGGGGCM WPPRSYTCSF CGREFKSAQA 60 LGGHMNVHRR DRARLKQQSL SSSSTDQVTP LDYDHHQQVQ KQPEVLDVGP KFPVQEDSRK 120 PNGSKREISD VLESSMKRFE HYNDEVKTDL SIGLVSSEFD PRRKQLINGV LASKKAKTDV 180 SRLPMMVGLV IGVSKINGHH EELDLELRLG ADPPKVN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 5e-13 | 41 | 68 | 2 | 29 | superman protein |
2l1o_A | 5e-13 | 41 | 68 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Not expressed in the inflorescence meristem or in the flowers at stages 1 and 2. First expressed in the precursor cells of petal primordia in stage 3 flowers and in the developing petal primordia up to stage 6. Not expressed at later stages. {ECO:0000269|PubMed:14681191}. | |||||
Uniprot | TISSUE SPECIFICITY: Strongly expressed in inflorescences and flowers, and weakly in siliques, seedlings and roots. In flowers, it is expressed in petal primordia and their precursor cells. Also expressed in the lateral root caps and the basal cells of lateral roots. {ECO:0000269|PubMed:14681191}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator essential for petal development. Required for the early development of the organ primordia of the second whorl. Acts downstream of AP1 and PTL. {ECO:0000269|PubMed:14681191}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00091444001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB107371 | 3e-67 | AB107371.1 Arabidopsis thaliana RBE mRNA for one finger-type zinc finger protein for RABBIT EARS, complete cds. | |||
GenBank | AP002030 | 3e-67 | AP002030.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K16F4. | |||
GenBank | AY088861 | 3e-67 | AY088861.1 Arabidopsis thaliana clone 97505 mRNA, complete sequence. | |||
GenBank | CP002688 | 3e-67 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013627963.1 | 1e-145 | PREDICTED: probable transcriptional regulator RABBIT EARS | ||||
Refseq | XP_013678515.1 | 1e-145 | probable transcriptional regulator RABBIT EARS | ||||
Refseq | XP_013682863.1 | 1e-145 | probable transcriptional regulator RABBIT EARS | ||||
Refseq | XP_013682864.1 | 1e-145 | probable transcriptional regulator RABBIT EARS | ||||
Swissprot | Q9LHS9 | 1e-117 | RBE_ARATH; Probable transcriptional regulator RABBIT EARS | ||||
TrEMBL | A0A078JQ06 | 1e-161 | A0A078JQ06_BRANA; BnaUnng03360D protein | ||||
STRING | Bo3g003640.1 | 1e-145 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5128 | 25 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06070.1 | 1e-119 | C2H2 family protein |
Publications ? help Back to Top | |||
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