PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00091343001

Common Name

GSBRNA2T00091343001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 374aa MW: 41061.8 Da PI: 6.6745

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00091343001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.7	0.00047	249	284	15	55
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +++ L +l+ + +K + a++L +A+ YI+ Lq GSBRNA2T00091343001 249 KLGGRIAALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 284 5566788888888887.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.299	234	283	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.23E-10	244	296	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.11E-5	244	288	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.4E-7	249	291	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MAPGNPNWWN VSGSMRPPQP LMGHQHGPLP PQMAPNNYVR PQMMPTLLPP FMPYPATSSS 60 PSLPNNPNLS SWLESNDLPP ESWSLSQLLL GGLMMGEDER LEMMKHHNHH VEQQHHNFQG 120 KMGLENWEEQ VLSHQQASMG VDDIKQESNI NNSNGYLTPS PNSPPNKSCV STITTTSLNS 180 NDDNNNNNNN SMLDFSSIHN GLNLSEGKHI PPDRSSECNS LEIGGSTNKK PRLQPSPSSQ 240 STLKVRKEKL GGRIAALHQL VSPFGKTDTA SVLSEAIGYI RFLQSQIEAL SHPYFGTTAS 300 GNMRHQQLLL NDQCMKRREA SFSSTETQNA NEEPKKDLRS RGLCLVPISC TLQVGSDNGA 360 DYWAPALGSA GFH*

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MAPGNPNWWN VSGSMRPPQP LMGHQHGPLP PQMAPNNYVR PQMMPTLLPP FMPYPATSSS  60
PSLPNNPNLS SWLESNDLPP ESWSLSQLLL GGLMMGEDER LEMMKHHNHH VEQQHHNFQG  120
KMGLENWEEQ VLSHQQASMG VDDIKQESNI NNSNGYLTPS PNSPPNKSCV STITTTSLNS  180
NDDNNNNNNN SMLDFSSIHN GLNLSEGKHI PPDRSSECNS LEIGGSTNKK PRLQPSPSSQ  240
STLKVRKEKL GGRIAALHQL VSPFGKTDTA SVLSEAIGYI RFLQSQIEAL SHPYFGTTAS  300
GNMRHQQLLL NDQCMKRREA SFSSTETQNA NEEPKKDLRS RGLCLVPISC TLQVGSDNGA  360
DYWAPALGSA GFH*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.23802	1e-108	leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00091343001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488634	0.0	AF488634.2 Arabidopsis thaliana clone bHLH068 putative bHLH transcription factor mRNA, complete cds.
GenBank	AY081316	0.0	AY081316.1 Arabidopsis thaliana putative protein (At4g29100) mRNA, complete cds.
GenBank	BT000121	0.0	BT000121.1 Arabidopsis thaliana putative protein (At4g29100) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009128996.1	0.0	PREDICTED: transcription factor bHLH68-like
Swissprot	Q8S3D1	0.0	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A078IF14	0.0	A0A078IF14_BRANA; BnaA01g07690D protein
STRING	Bra011083.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1872	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	1e-170	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]