PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00088278001 | ||||||||
Common Name | GSBRNA2T00088278001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 839aa MW: 91903.5 Da PI: 6.4177 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.7 | 2.1e-18 | 17 | 75 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++ +++ps +r++L +++ +++ +q+kvWFqNrR +ek+ GSBRNA2T00088278001 17 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75 5679*****************************************************97 PP | |||||||
2 | START | 167.7 | 8.1e-53 | 161 | 369 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s+++ g a+ra+g+v +++ v+e+++d++ W + ++++++++v+ ++ g GSBRNA2T00088278001 161 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIISISHGCAGVAARACGLVGLEPT-RVAEIVKDRPSWFRECRAVDVMNVLPTAngG 249 7899******************************************************.7777777777****************9999* PP EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS START 90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175 +++l +++l+a+++l+p Rdf+ +Ry+ l++g++v++++S+ s+q+ p+ +++vRae+lpSg+li+p+++g+s +++v+h+dl++ GSBRNA2T00088278001 250 TIELLYMQLYAPTTLAPpRDFWLLRYTSVLEDGSLVVCERSLKSTQNGPSmplVQHFVRAEMLPSGYLIRPCDGGGSIIHIVDHMDLEAC 339 *************************************************999999*********************************** PP XXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 176 lphwllrslvksglaegaktwvatlqrqce 205 +++++lr+l++s + ++kt++a l+++++ GSBRNA2T00088278001 340 SVPEVLRPLYESPKVLAQKTTMAVLRQLKQ 369 **************************9886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 1.2E-15 | 14 | 80 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.7E-17 | 16 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.31E-16 | 17 | 77 | No hit | No description |
Pfam | PF00046 | 5.8E-16 | 18 | 75 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-18 | 19 | 75 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.127 | 20 | 76 | IPR001356 | Homeobox domain |
CDD | cd14686 | 1.14E-6 | 69 | 108 | No hit | No description |
PROSITE profile | PS50848 | 25.045 | 151 | 379 | IPR002913 | START domain |
CDD | cd08875 | 5.81E-73 | 155 | 371 | No hit | No description |
SMART | SM00234 | 5.3E-36 | 160 | 370 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 8.7E-20 | 160 | 342 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.09E-35 | 160 | 372 | No hit | No description |
Pfam | PF01852 | 2.7E-50 | 161 | 369 | IPR002913 | START domain |
Pfam | PF08670 | 1.5E-52 | 695 | 837 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 839 aa Download sequence Send to blast |
MAMSCKDGKM GCLDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSNIEPK 60 QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVSQL VHENSYFRQH 120 TPNPTLPAKD TSCESVVTSG QHQLASQNPP RDASPAGLLS IAEETLAEFL SKATGTAVEW 180 VQMPGMKPGP DSIGIISISH GCAGVAARAC GLVGLEPTRV AEIVKDRPSW FRECRAVDVM 240 NVLPTANGGT IELLYMQLYA PTTLAPPRDF WLLRYTSVLE DGSLVVCERS LKSTQNGPSM 300 PLVQHFVRAE MLPSGYLIRP CDGGGSIIHI VDHMDLEACS VPEVLRPLYE SPKVLAQKTT 360 MAVLRQLKQI AQEVSQTNSS VNGWGRRPAA LRALSQRLSR GFNEAVNGFT DEGWSVMGDS 420 MDDVTITVNS SPDKLMGLNL AFSNGFTPVS SVVLCAKASM LLQNVPPAIL LRFLREHRSE 480 WADNNIDAYL AAAVKVGPCS ARVGGFGGQV ILPLAHTIEH EESMEVIKLE GLGHSPEDAI 540 VPRDIFLLQL CSGMDENAVG TCAELIFAPI DASFADDAPL LPSGFRIIPL DSTKEVSSPN 600 RTLDLASALE IGPAGTTKAS TDQSGISGTC ARSVMTIAFE FGIESHMQEH VASMARQYVR 660 GIISSVQRVA LALSPSHISS QVGLRTPLGT PEAQTLARWI CQSYRCYMGV ELLKSTSEGS 720 ESVLKNLWHH TDAIICCSMK AMPVFTFANQ AGLDMLETTL VSLQDISLEK IFDDNGRKTL 780 CSEFPQIMQQ GFASLQGGIC LSSMGRPVSY ERAVAWKVLN EEENAHCICF VFINWSFV* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bna.26301 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed the developing vascular elements and the adaxial portion of cotyledons. Expressed in developing ovules, stamens and carpels. Expressed in procambium and shoot meristem. {ECO:0000269|PubMed:14701930, ECO:0000269|PubMed:15705957}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00088278001 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AJ439449 | 0.0 | AJ439449.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein (ATHB-15 gene). | |||
GenBank | AY060556 | 0.0 | AY060556.1 Arabidopsis thaliana At1g52150/F5F19_21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013592012.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-15 | ||||
Swissprot | Q9ZU11 | 0.0 | ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15 | ||||
TrEMBL | A0A078IEN5 | 0.0 | A0A078IEN5_BRANA; BnaC06g05240D protein | ||||
TrEMBL | A0A0D3CQ65 | 0.0 | A0A0D3CQ65_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g027650.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2022 | 26 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G52150.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|