PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00087095001
Common NameGSBRNA2T00087095001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 267aa    MW: 30543.7 Da    PI: 10.0494
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00087095001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.22.2e-11137244182
                          EEEE-..-HHHHT.T-EE--HHH.HTT.................---..--SEEEEEETTS-EEEEEE...........EEETTE....E CS
                   B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.................ggkkeesktltledesgrsWevkliy.........rkksgr....y 59 
                          f+k+l+ sdv+ + +rl +p k ++++                 +gkk  +++  l +e++++W++ ++          +         y
  GSBRNA2T00087095001 137 FEKTLLVSDVNPNqSRLLIPFKTLKRNnfltqeessflvqdenkKGKK-PGVEAFLVNERSQTWSLVFKRwvmkkekdsQ----NgslhY 221
                          8999999999988799*********999*9999999999988864444.4589999999999999999555886643322....26677* PP

                          EE-TTHHHHHHHHT--TT-EEEE CS
                   B3  60 vltkGWkeFvkangLkegDfvvF 82 
                          vl +GW++ vk+n+L+++D + +
  GSBRNA2T00087095001 222 VLNRGWNDIVKDNKLEANDKISL 244
                          *******************8766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037548.0E-32130233IPR005508B3 domain-containing protein
Gene3DG3DSA:2.40.330.101.9E-19132260IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.39E-18133258IPR015300DNA-binding pseudobarrel domain
CDDcd100171.13E-12136257No hitNo description
SMARTSM010190.0061137261IPR003340B3 DNA binding domain
PROSITE profilePS5086311.011138261IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MKSGEDDHYP LRMKIDWSDK VTKTLEEAML KAKSSCIHKF DLNKLPPSDT DDEEQDEAKR  60
RDHKVSSGAP SRFCNNFDLN KSPKEEPPNH DGHKVTQNLL NPKPLKKRGR GNSGRLNKAK  120
KQRVDVVLEV KDAILIFEKT LLVSDVNPNQ SRLLIPFKTL KRNNFLTQEE SSFLVQDENK  180
KGKKPGVEAF LVNERSQTWS LVFKRWVMKK EKDSQNGSLH YVLNRGWNDI VKDNKLEAND  240
KISLWSFRSD GVLCFSLVTH PSTISS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00087095001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013665103.10.0putative B3 domain-containing protein At3g49610
SwissprotQ9SCJ84e-40Y3961_ARATH; Putative B3 domain-containing protein At3g49610
TrEMBLA0A078I8N80.0A0A078I8N8_BRANA; BnaA10g03610D protein
STRINGBra015425.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2731015
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05930.12e-27B3 family protein
Publications ? help Back to Top
  1. Baerenfaller K, et al.
    Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics.
    Science, 2008. 320(5878): p. 938-41
    [PMID:18436743]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]