PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00084311001 | ||||||||
Common Name | GSBRNA2T00084311001, LOC106381434 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | BES1 | ||||||||
Protein Properties | Length: 294aa MW: 31428 Da PI: 8.4802 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 179.6 | 1.4e-55 | 2 | 130 | 1 | 123 |
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssas.. 87 ++++r+ptw+ErEnnkrRERrRRaiaaki++GLR++Gny+lpk++DnneVlkALc+eAGw+ve+DGttyrkgs+++ e++e++gs s GSBRNA2T00084311001 2 TSGTRMPTWRERENNKRRERRRRAIAAKIFTGLRMYGNYELPKHCDNNEVLKALCNEAGWIVEPDGTTYRKGSSRPvERMEIGGSPCSsn 91 5899*********************************************************************9999****999765523 PP DUF822 88 .aspesslqsslkssalaspvesys..aspksssfpsps 123 +sp ss+ +l+ +s ++ + ++++sss s+s GSBRNA2T00084311001 92 fMSPASSSFANLTPGDGQSLIPWLKhlSTTSSSSASSSS 130 467777766555555555555444300333333333333 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 1.9E-49 | 3 | 130 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 294 aa Download sequence Send to blast |
MTSGTRMPTW RERENNKRRE RRRRAIAAKI FTGLRMYGNY ELPKHCDNNE VLKALCNEAG 60 WIVEPDGTTY RKGSSRPVER MEIGGSPCSS NFMSPASSSF ANLTPGDGQS LIPWLKHLST 120 TSSSSASSSS RLPNYLYIPG GSISAPVTPP LSSPTSRGMN QQINNSFFVS STPPSPTRQQ 180 TIPDCEWFSG IQLAQSVPAS PTFSLVSQNP FGFKEAGGGG GGSRMWTPGQ SGTCSPAIPQ 240 TADVPMSEAV VAPPEFAFGS SANGLVKAWE GERIHEVSGS DDLELTLGNS STR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 1e-21 | 6 | 73 | 372 | 439 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 1e-21 | 6 | 73 | 372 | 439 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 1e-21 | 6 | 73 | 372 | 439 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 1e-21 | 6 | 73 | 372 | 439 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bna.22597 | 0.0 | root| seed |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00084311001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY050430 | 1e-125 | AY050430.1 Arabidopsis thaliana At1g78700/F9K20_26 mRNA, complete cds. | |||
GenBank | AY090331 | 1e-125 | AY090331.1 Arabidopsis thaliana At1g78700/F9K20_26 mRNA, complete cds. | |||
GenBank | CP002684 | 1e-125 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | F9K20 | 1e-125 | AC005679.1 Arabidopsis thaliana chromosome 1 BAC F9K20 sequence, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013615912.1 | 0.0 | PREDICTED: BES1/BZR1 homolog protein 4 | ||||
Refseq | XP_013676783.1 | 0.0 | BES1/BZR1 homolog protein 4 | ||||
Swissprot | Q9ZV88 | 1e-155 | BEH4_ARATH; BES1/BZR1 homolog protein 4 | ||||
TrEMBL | A0A078FQK0 | 0.0 | A0A078FQK0_BRANA; BnaC02g25200D protein | ||||
TrEMBL | A0A0D3ARI8 | 0.0 | A0A0D3ARI8_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6D902 | 0.0 | A0A3P6D902_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g094650.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1917 | 27 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G78700.1 | 1e-135 | BES1/BZR1 homolog 4 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 106381434 |
Publications ? help Back to Top | |||
---|---|---|---|
|