PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00080799001
Common NameGSBRNA2T00080799001, LOC106380553
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 351aa    MW: 38972.8 Da    PI: 4.6854
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00080799001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.54.8e-4861341129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          l pGfrFhPtd elv +yLk+kv gkkl + ++i+evdiyk+eP+dLp k  +k+++ +w+fF++r+kky+tg r+nrat+ gyWk+tgk
  GSBRNA2T00080799001   6 LSPGFRFHPTDVELVRYYLKRKVLGKKLLV-DAIAEVDIYKFEPSDLPdKsFIKSGDLKWHFFCPREKKYSTGVRANRATACGYWKTTGK 94 
                          579************************999.89**************96446777888******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          ++evl+ +ge+ g  ktLv++ g++p+g++tdWvmheyrle
  GSBRNA2T00080799001  95 EREVLC-NGEVAGKIKTLVYHFGKSPRGKRTDWVMHEYRLE 134
                          ******.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.07E-563156IPR003441NAC domain
PROSITE profilePS5100552.0776156IPR003441NAC domain
PfamPF023659.8E-268133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGKTQLSPGF RFHPTDVELV RYYLKRKVLG KKLLVDAIAE VDIYKFEPSD LPDKSFIKSG  60
DLKWHFFCPR EKKYSTGVRA NRATACGYWK TTGKEREVLC NGEVAGKIKT LVYHFGKSPR  120
GKRTDWVMHE YRLEDKVLTQ KNVPQDTYVL CVLFKKDGPG PRNGAQYGAP FKDEDWSDED  180
VPATNGPTIL HGETSLVAAS SSRDPTKDCF GGMVSESCVS EFVPATSDLP QLNGAANTPM  240
SAAPLLDSNS TASLAPPTLE APTNNYDDLY SMLDLFVDDD EFLRFSEPSN NEIGHDPNVY  300
APICLGEGED IFSELPDFSN MQHNSMQRAP SCDLIENSEL YLELQDLTAP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-45615615168Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.88470.0microspore-derived embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the epidermal cells of the root apical region. {ECO:0000269|PubMed:20388856}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00080799001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667581e-171KC966758.1 Brassica napus NAC transcription factor 82 (NAC82.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013615911.10.0PREDICTED: NAC domain-containing protein 82-like isoform X2
RefseqXP_013675780.10.0NAC domain-containing protein 82
SwissprotQ9FY821e-177NAC82_ARATH; NAC domain-containing protein 82
TrEMBLA0A078I6M60.0A0A078I6M6_BRANA; BnaC02g00940D protein
TrEMBLA0A0D3AI970.0A0A0D3AI97_BRAOL; Uncharacterized protein
STRINGBo2g009300.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36922562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.41e-166NAC domain containing protein 82
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]