PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00078582001
Common NameGSBRNA2T00078582001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 749aa    MW: 83024.4 Da    PI: 6.9474
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00078582001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like69.84.4e-22195247154
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                          k +l W+  LH+ F++a++++ G +kA+Pk+ile+m+v  Lt+e+v+SHLQkYR
  GSBRNA2T00078582001 195 KSKLSWSDYLHDLFLQAIHHI-GLDKAVPKKILEFMDVSYLTRENVASHLQKYR 247
                          679******************.******************************** PP
2Response_reg68.33.4e-23181321109
                          EEEESSSHHHHHHHHHHHHHTTC....EEEE..EESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTT CS
         Response_reg   1 vlivdDeplvrellrqalekegy....eeva..eaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahge 82 
                          +++vdD+p+ re++ ++le+++y    +e++  +++d++eal +l  +++++Dli++D  mpgm+Gl+l ++i+++  + p+iv+++  +
  GSBRNA2T00078582001  18 IMVVDDDPVSREIMSRMLERSKYrdpsMEITviAVRDAREALSTLkiQRNNIDLIVTDYYMPGMNGLQLKQQITRQFGNFPVIVMSSDTN 107
                          89*****************8777555533333599********99445555**********************99999********7766 PP

                          HHHHHHHHHTTESEEEESS--HHHHHH CS
         Response_reg  83 eedalealkaGakdflsKpfdpeelvk 109
                              +e l  G   fl Kp++p +l k
  GSBRNA2T00078582001 108 --KEQESLACGSVCFLPKPIKPTDLPK 132
                          ..67899****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.4E-2715143No hitNo description
SuperFamilySSF521721.41E-2516147IPR011006CheY-like superfamily
SMARTSM004485.9E-2216134IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011034.24417138IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.3E-2018133IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.07E-2419130No hitNo description
SuperFamilySSF466897.53E-16193252IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-22193252IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-24195249IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    Send to blast
MTFAQSLNNQ SSVLRINIMV VDDDPVSREI MSRMLERSKY RDPSMEITVI AVRDAREALS  60
TLKIQRNNID LIVTDYYMPG MNGLQLKQQI TRQFGNFPVI VMSSDTNKEQ ESLACGSVCF  120
LPKPIKPTDL PKIYQVAFTY KRKGKSISRT EHNHMDTNVS IPQQIQLLPE QANVSRTKKN  180
KKFSSRSDSR SPSKKSKLSW SDYLHDLFLQ AIHHIGLDKA VPKKILEFMD VSYLTRENVA  240
SHLQKYRNFL RKVAESSGML HGRGMEPYHS NYTTSSSWYD TGLNNKSSYS KPRHGLGQSR  300
LLSNTCEPVR FNQMPYNHMN RLSTYEPHRT GSNLTMPIKS NLSFSTQPLQ NEGSRSFLEP  360
TVTANKTGQT SQVLGLGQHG MSATNDNNFI NNMMRSYGRI SIYASSTSNQ PGMNSHGSST  420
PNQPGMSSYG SVSPNQLGMS SHGSLTPSQR GMSSYESLTS NQPGMSSHGS LTPTQPGMIS  480
RGSLTPTQQG ISSYGILSPS QLGLSTQPGM SNQGSLGPTQ RGMGMSNYGS LTSYQPALST  540
HGSLFPNQPG ISSHISLPPT QQGMSSFGSL TTNHSGMSSY EILTPAQPGP SHISYGLLLD  600
NENTAYKPQP HASTTIQPDN LSLYDDLGNI NEIPFDLSNF DFDHDKQQEE AVSANKFEIP  660
ANLETELNQT SSLEEDGDWT FLNINQGHFN EKTSNTFAAP EMNDPTFNKN PNHAQEQDVP  720
DFDWSLLDFV NLANENDFMD SMFTNDMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-17191254164ARR10-B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mainly expressed in siliques. Also found in germinating seedlings, stems, flowers and roots, but not in rosette leaves. {ECO:0000269|PubMed:15173562, ECO:0000269|Ref.3}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00078582001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125679.10.0PREDICTED: putative two-component response regulator ARR21 isoform X1
SwissprotQ9LYP51e-176ARR21_ARATH; Putative two-component response regulator ARR21
TrEMBLA0A078FP070.0A0A078FP07_BRANA; BnaC02g01700D protein
STRINGBo2g007540.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61131737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.11e-172response regulator 21
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]