PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00078169001
Common NameGSBRNA2T00078169001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 296aa    MW: 32849.6 Da    PI: 8.9127
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00078169001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH407e-13119166355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          + h  +Er+RR+++ ++f  L  l+P +     kK++Ka++L  A+++Ik+Lq
  GSBRNA2T00078169001 119 QEHILAERKRREKLTQRFVALSALIPGL-----KKMDKASVLGDAIKHIKYLQ 166
                          56999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.656116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-10119166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.23E-16120180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-17120177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.03E-13121169No hitNo description
SMARTSM003536.4E-15122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MNSLLGDFPQ SLSSLDDTST CYNFGASCND YLVEEEPSKI LKTTHESPNL HLYPFANSTS  60
PHPQPSSRFL SFEKTGLKVM NHKSPNLIFS PKEKFGSEDL IRRGTKKAQP LARSPSNAQE  120
HILAERKRRE KLTQRFVALS ALIPGLKKMD KASVLGDAIK HIKYLQESVN EYEKQKKGRT  180
LESVVLVNKS QLVLDEHHKL SPSFSDGNRD YSSSNLPEIE VRVSGKDVLI KIICEKQKGN  240
LIKIMGEIEK LGLSITNSSL LPFGPTSDIS IIAQKTCDFD MKVEDVVKSL SCGLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-13121176964Transcription factor MYC2
5gnj_B6e-13121176964Transcription factor MYC2
5gnj_E6e-13121176964Transcription factor MYC2
5gnj_F6e-13121176964Transcription factor MYC2
5gnj_G6e-13121176964Transcription factor MYC2
5gnj_I6e-13121176964Transcription factor MYC2
5gnj_M6e-13121176964Transcription factor MYC2
5gnj_N6e-13121176964Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124129ERKRRE
2125130RKRREK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00078169001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022547575.10.0transcription factor bHLH18-like
SwissprotQ1PF171e-143BH018_ARATH; Transcription factor bHLH18
TrEMBLA0A078FL710.0A0A078FL71_BRANA; BnaA09g42390D protein
STRINGBra039924.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.21e-145bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]