PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00076997001 | ||||||||
Common Name | GSBRNA2T00076997001, LOC106450168 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 291aa MW: 33221.6 Da PI: 4.644 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.4 | 5.3e-08 | 166 | 210 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r RR+ri ++ +eL +l+P +Kl+ ae+ + A +Y+k Lq GSBRNA2T00076997001 166 SIAARERRRRIADKTQELTKLIPGG-----QKLNTAEMFQAAAKYVKFLQ 210 567899*****************86.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.18E-10 | 159 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.309 | 160 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-10 | 163 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-5 | 166 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.4E-8 | 166 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.22E-4 | 181 | 213 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MSSMDCLSHF FNWDQPIQLQ DCFIPDMDMI IPETDSFYFQ SQPQMQFDRP LFQEEAPSQS 60 LLELTHFDAF CDQLLPPQEI FLPYPKAETF DESHNMDSFL PTSKRQKLFN SSYHCNTHNH 120 FPSPNLEYVP EASIFPEFMV PDFPLAFEAG RGDQEGTKRP TLSSQSIAAR ERRRRIADKT 180 QELTKLIPGG QKLNTAEMFQ AAAKYVKFLQ SQVGILQMMQ TTKKRQGISD AEIETKVLLG 240 SQAIQEKLST EEVCLVPCEM VRELTSEESS WRNPKISGEI TKLLSTDLAN * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00076997001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189655 | 0.0 | AC189655.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS012M03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013747277.2 | 0.0 | transcription factor bHLH53 | ||||
Swissprot | Q84RD0 | 1e-139 | BH053_ARATH; Transcription factor bHLH53 | ||||
TrEMBL | A0A078I0N0 | 0.0 | A0A078I0N0_BRANA; BnaA04g20390D protein | ||||
STRING | Bra021933.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4547 | 25 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34820.1 | 1e-140 | bHLH family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106450168 |
Publications ? help Back to Top | |||
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