PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00075836001 | ||||||||
Common Name | GSBRNA2T00075836001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 555aa MW: 61648.6 Da PI: 7.1413 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.3 | 2e-14 | 29 | 76 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ede+l+ +v++ G g+W++ ++ + R++k+c++rw ++l GSBRNA2T00075836001 29 KGPWTAAEDEILAAYVRENGEGNWNALQKHTCLARCGKSCRLRWANHL 76 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 46.4 | 9.3e-15 | 82 | 125 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T +E+ l++++++qlG++ W++ a+ ++ gRt++++k++w++ GSBRNA2T00075836001 82 KGSFTGDEERLIIQLHAQLGNK-WARMAAQLP-GRTDNEIKNYWNT 125 789*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.11 | 24 | 76 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.09E-27 | 27 | 123 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-11 | 28 | 78 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.0E-13 | 29 | 76 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-21 | 30 | 83 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.60E-9 | 31 | 76 | No hit | No description |
PROSITE profile | PS51294 | 24.478 | 77 | 131 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-15 | 81 | 129 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-13 | 82 | 125 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-24 | 84 | 129 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.88E-11 | 84 | 127 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 555 aa Download sequence Send to blast |
MILYGVGTGN DGGSTNHISD GGGRVTLKKG PWTAAEDEIL AAYVRENGEG NWNALQKHTC 60 LARCGKSCRL RWANHLRPNL KKGSFTGDEE RLIIQLHAQL GNKWARMAAQ LPGRTDNEIK 120 NYWNTRLKRL QRQGLPLYPP DVIPNHQLHP HPQHQHQQQN QHQQMYFHPH SSQPNTPSSS 180 PLPSPTQLNA NPSSSFTFHT TNASTANLLH PLSPHTPTTP QTPSQLSSRP PPQPLSSPLS 240 SPLNNQYPTL PLFNNNNNNT NFTFPRPPPL LQPPSSLLAR RYNNSNTPLN YTNRVSTAPF 300 SPVSRDSYTS FLTLPYSSSA APNTQPITYH NTNNNYSSFS LNPSSSSYPT TTSFPSFLHS 360 HYTPNSSSTS FHTNPVYSMK QDLPSNQIPQ ICAFNNVNNF TDNKKGLHRR SISCSLLEDV 420 MEEAEALDGG GGGRPPKRRQ LTYSPLNNHH NNNDNDFFSV TFGQYDSSEN ICSLQDLKPK 480 EGETLEMNTM QEDIAKLLDW GSDSGEISNR QSSAVTDENL VLDVHQFASL FPADSTPAAN 540 DNNDNNNFSW DDLD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 6e-30 | 27 | 129 | 2 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 6e-30 | 27 | 129 | 2 | 103 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 433 | 438 | RPPKRR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Accumulates in the pollen tube nucleus during pollen tube growth through the pistil. {ECO:0000269|PubMed:23791732}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in pollen grains and pollen tube (PubMed:23791732, PubMed:24278028). Mostly expressed in mature pollen grains, and, to a lower extent, in inflorescences and siliques (PubMed:24278028). {ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:24278028). Binds to 5'-CAACTGTC-3' and/or 5'-TAACAAA-3' motif in target gene promoter to promote their expression (By similarity). Together with MYB97 and MYB101, functions as a male factor that controls pollen tube-synergid interaction in fertilization. Required for pollen tube growth arrest and sperm cell release in the female gametophyte, probably via the regulation of pollen tube-specific gene expression (PubMed:24278028, PubMed:23791732). {ECO:0000250|UniProtKB:O80883, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00075836001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates in pollen tube 4 hours after pollen germination. {ECO:0000269|PubMed:19714218}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189303 | 0.0 | AC189303.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB030F12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013628926.1 | 0.0 | PREDICTED: myb-like protein A | ||||
Swissprot | Q94FL7 | 0.0 | MY120_ARATH; Transcription factor MYB120 | ||||
TrEMBL | A0A078HZP6 | 0.0 | A0A078HZP6_BRANA; BnaA03g11630D protein | ||||
STRING | Bra028997.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9939 | 19 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55020.1 | 8e-83 | myb domain protein 120 |
Publications ? help Back to Top | |||
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