PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00075217001
Common NameGSBRNA2T00075217001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 281aa    MW: 32235.4 Da    PI: 7.5804
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00075217001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.71e-08145191555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h+ +Er RR++i +++  L++++P +    +k   Ka +L + ++Y++sLq
  GSBRNA2T00075217001 145 HSLAERARREKISKKMKCLQDIVPGC----NKVTGKAGMLDEIINYVQSLQ 191
                          999**********************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.64E-7138195No hitNo description
SuperFamilySSF474599.03E-17138210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.634140190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-17142209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-6145191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-10146196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MDLTGLKWLQ QHQQMVSPEF LQILGSDGRE ELRRVESYLG NNLDELQNFR PGYDTIDGCI  60
SRTSSFQMEP VKSNEENRVV ALQNKRKPEG KRETREKKKK IKAEDETESS MKGNSDMSNT  120
ETSSDVLKQD YIHVRARRGE ATDRHSLAER ARREKISKKM KCLQDIVPGC NKVTGKAGML  180
DEIINYVQSL QQQVEFLSMK LSFLNPQLEF HIHELSSMMA DQRSFPLHQQ GSLDYSVINS  240
NQTTSLNALK METSLSWDVH SQCLYNNLRT DSVFSFFSLK *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18499KRKPEGKRETREKKKK
28599RKPEGKRETREKKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.238004e-52leaf| vegetative meristem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00075217001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flagellin, jasmonic acid (JA), brassinosteroid and cytokinin, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087, ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639945.10.0transcription factor BEE 2-like
SwissprotQ93VJ41e-158BEE2_ARATH; Transcription factor BEE 2
TrEMBLA0A078I0S80.0A0A078I0S8_BRANA; BnaA03g53460D protein
STRINGBo7g118000.11e-170(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34062363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36540.21e-142BR enhanced expression 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Singh M,Gupta A,Singh D,Khurana JP,Laxmi A
    Arabidopsis RSS1 Mediates Cross-Talk Between Glucose and Light Signaling During Hypocotyl Elongation Growth.
    Sci Rep, 2017. 7(1): p. 16101
    [PMID:29170398]