PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00066237001
Common NameGSBRNA2T00066237001, LOC106451553
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 322aa    MW: 35969.4 Da    PI: 8.2086
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00066237001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.1e-165599147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         r +WT+ E+e++v+a k++G   W++I +++g ++t+ q++s+ qk+
  GSBRNA2T00066237001 55 REKWTEAEHEKFVEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 99
                         789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.05E-1549103IPR009057Homeodomain-like
PROSITE profilePS5129420.70550104IPR017930Myb domain
TIGRFAMsTIGR015571.7E-1653102IPR006447Myb domain, plants
SMARTSM007171.6E-1254102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-95595IPR009057Homeodomain-like
PfamPF002491.9E-135598IPR001005SANT/Myb domain
CDDcd001672.76E-957100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009845Biological Processseed germination
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MVQNLISDES FSSTTMVMQE HCESLCDRAS DELIISSTDA FCLKTRKPYT ITKQREKWTE  60
AEHEKFVEAL KLYGRAWRRI EEHVGTKTAV QIRSHAQKFF TKVARDCGVT SEKSIEIPPP  120
RPKRKPMHPY PRKLVIPDAK EMAYAGKLVP DEDSRSPTSV LSAHGSDGLG SIGSNSPNSS  180
SADYQVHELS SHTEESLSPE AETKQQSLKL FGKTFVVGDY NSWTSSNDSE DVKKKSDLET  240
QSVRCTSSSS SSSENAETEL TQQVVVVVVS EEFKRSERSA FSQLKSSAIA MKNMKGFMPY  300
KKRMKVEGNT NSLVKTSYPI W*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator for cold-responsive gene expression and cold tolerance. Part of a regulatory feedback loop that controls a subset of the circadian outputs and modulates the central oscillator. Negatively self-regulates its own expression. {ECO:0000269|PubMed:17587236, ECO:0000269|PubMed:23371945}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00066237001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Up-regulated transiently by light. {ECO:0000269|PubMed:17587236, ECO:0000269|PubMed:19805390}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195151e-149AY519515.1 Arabidopsis thaliana MYB transcription factor (At5g37260) mRNA, complete cds.
GenBankBT0109471e-149BT010947.1 Arabidopsis thaliana At5g37260 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009144670.10.0PREDICTED: protein REVEILLE 2
RefseqXP_013748950.10.0protein REVEILLE 2
SwissprotF4K5X61e-153RVE2_ARATH; Protein REVEILLE 2
TrEMBLA0A078HLV30.0A0A078HLV3_BRANA; BnaA05g12950D protein
TrEMBLA0A397ZBD30.0A0A397ZBD3_BRACM; Uncharacterized protein
STRINGBra039503.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144321922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.11e-122MYB_related family protein
Publications ? help Back to Top
  1. Chaudhury A,Okada K,Raikhel NV,Shinozaki K,Sundaresan V V
    A weed reaches new heights down under
    Plant Cell, 1999. 11(10): p. 1817-26
    [PMID:10521514]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Jiang Z,Xu G,Jing Y,Tang W,Lin R
    Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 12377
    [PMID:27506149]