PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00066186001

Common Name

GSBRNA2T00066186001, LOC106388394, LOC106388396, LOC106438484

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB

Protein Properties

Length: 433aa MW: 48004.9 Da PI: 5.1726

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00066186001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.8	1.1e-17	22	69	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed+ll+ +v ++G g+W+++ ++ g+ R++k+c++rw ++l GSBRNA2T00066186001 22 KGPWTSAEDQLLIAYVDKHGDGNWNAVQKHSGLSRCGKSCRLRWVNHL 69 79*******************************************996 PP
2	Myb_DNA-binding	43.5	7.3e-14	75	118	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T E+++ +++++ +G++ W++ a +++ gRt++++k++w++ GSBRNA2T00066186001 75 KGSFTDKEEQRVIELHASMGNK-WARMATELP-GRTDNEIKNFWNT 118 799*****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.812	17	69	IPR017930	Myb domain
SuperFamily	SSF46689	3.56E-28	21	116	IPR009057	Homeodomain-like
SMART	SM00717	5.7E-15	21	71	IPR001005	SANT/Myb domain
Pfam	PF00249	3.9E-16	22	69	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.3E-24	23	76	IPR009057	Homeodomain-like
CDD	cd00167	8.07E-12	24	69	No hit	No description
PROSITE profile	PS51294	23.553	70	124	IPR017930	Myb domain
SMART	SM00717	1.1E-13	74	122	IPR001005	SANT/Myb domain
Pfam	PF00249	9.2E-13	75	118	IPR001005	SANT/Myb domain
CDD	cd00167	1.65E-9	77	118	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.2E-23	77	122	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MGKVRHDSGS GDEFAIDKAF HKGPWTSAED QLLIAYVDKH GDGNWNAVQK HSGLSRCGKS 60 CRLRWVNHLR PDLKKGSFTD KEEQRVIELH ASMGNKWARM ATELPGRTDN EIKNFWNTRV 120 KRLQRLGLPI YPDEVREQAM NAAAQNGHNA DSLDGHHSQE SLELDCLEIP ELNFKHLQLN 180 GGSSFLQSML SSVPTGNQMR QNPGLFQPNI YNVIASPYHQ PPNRKRFREP ETAFPYTGGY 240 ATDEHSAQLW NSPFVESTPG QFNVAPDSHF LGNATTYSSP SEPLIHGAEK LELPSFQCFD 300 TQEEPGDWEA QHSNPMQAIE SDNTLVLSSP LTDPTPSECP SSFCDGLLES VVYGSSGEKQ 360 TTTTDPDSPL LQSSLLGHID ITPATANTAG HNSSAETDLV HFGPTFSNER RTSFEGGDWI 420 RQLLGEDRDY TK*

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MGKVRHDSGS GDEFAIDKAF HKGPWTSAED QLLIAYVDKH GDGNWNAVQK HSGLSRCGKS  60
CRLRWVNHLR PDLKKGSFTD KEEQRVIELH ASMGNKWARM ATELPGRTDN EIKNFWNTRV  120
KRLQRLGLPI YPDEVREQAM NAAAQNGHNA DSLDGHHSQE SLELDCLEIP ELNFKHLQLN  180
GGSSFLQSML SSVPTGNQMR QNPGLFQPNI YNVIASPYHQ PPNRKRFREP ETAFPYTGGY  240
ATDEHSAQLW NSPFVESTPG QFNVAPDSHF LGNATTYSSP SEPLIHGAEK LELPSFQCFD  300
TQEEPGDWEA QHSNPMQAIE SDNTLVLSSP LTDPTPSECP SSFCDGLLES VVYGSSGEKQ  360
TTTTDPDSPL LQSSLLGHID ITPATANTAG HNSSAETDLV HFGPTFSNER RTSFEGGDWI  420
RQLLGEDRDY TK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	8e-30	22	122	7	106	B-MYB
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00279	DAP	Transfer from AT2G26960	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00066186001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR076552	0.0	KR076552.1 Brassica napus MYB transcription factor 81-2 (MYB81-2.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013623675.1	0.0	PREDICTED: transcription factor MYB104-like
Refseq	XP_013683905.1	0.0	transcription factor MYB104-like
Refseq	XP_013683907.1	0.0	transcription factor MYB104-like
Refseq	XP_013735104.1	0.0	transcription factor MYB104-like
TrEMBL	A0A078HJC0	0.0	A0A078HJC0_BRANA; BnaC03g26620D protein
TrEMBL	A0A0D3B7F2	0.0	A0A0D3B7F2_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6AYS0	0.0	A0A3P6AYS0_BRAOL; Uncharacterized protein
STRING	Bo3g041750.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9198	21	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26960.1	1e-172	myb domain protein 81

Link Out ? help Back to Top
Entrez Gene	106388394 \| 106388396 \| 106438484

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]