PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00066097001 | ||||||||
Common Name | GSBRNA2T00066097001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 266aa MW: 30332.3 Da PI: 9.1266 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.1 | 1.1e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien rqvtfskRr+g+lKKA+ELSvLCd evavi+fs++gkl+e+ss GSBRNA2T00066097001 9 KRIENANSRQVTFSKRRAGLLKKAHELSVLCDSEVAVIVFSKSGKLFEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 81.4 | 2.1e-27 | 84 | 174 | 10 | 100 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + +++e+ ++e++ Lk+ei++Lq+++ +++G++L+ L lkeLq+LeqqL+ sl ++R++K+ ll++qiee++ +e++++ en++Lr++++ GSBRNA2T00066097001 84 KPENQEEDCTEVDFLKNEISKLQEKHLQMQGKGLNALCLKELQHLEQQLNVSLISVRERKELLLTKQIEESRIREQRAELENETLRRQVQ 173 5578999*********************************************************************************98 PP K-box 100 e 100 e GSBRNA2T00066097001 174 E 174 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.0E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.791 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.42E-43 | 3 | 76 | No hit | No description |
SuperFamily | SSF55455 | 6.41E-31 | 3 | 74 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.6E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 7.8E-18 | 87 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.186 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MDRGKIEIKR IENANSRQVT FSKRRAGLLK KAHELSVLCD SEVAVIVFSK SGKLFEFSST 60 GMKRTLLRYE NYQRSSDAPL IKYKPENQEE DCTEVDFLKN EISKLQEKHL QMQGKGLNAL 120 CLKELQHLEQ QLNVSLISVR ERKELLLTKQ IEESRIREQR AELENETLRR QVQELRNFLP 180 SINQNYVPSY ITCFAIDPKN SPVNNSGLDD TNYSLQKTNS DTTLQLGLPG EAQARRRSEG 240 NRESPSSDSV TTSTTKATPQ RINLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 9e-23 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6byy_B | 9e-23 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6byy_C | 9e-23 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6byy_D | 9e-23 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6bz1_A | 8e-23 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6bz1_B | 8e-23 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6bz1_C | 8e-23 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
6bz1_D | 8e-23 | 1 | 72 | 1 | 72 | MEF2 CHIMERA |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.2136 | 0.0 | flower| microspore-derived embryo| seed |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00066097001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BNU22681 | 0.0 | U22681.1 Brassica napus AGL15 type 2 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009121726.1 | 1e-170 | PREDICTED: agamous-like MADS-box protein AGL15 isoform X1 | ||||
Swissprot | Q39295 | 1e-143 | AGL15_BRANA; Agamous-like MADS-box protein AGL15 | ||||
TrEMBL | A0A078JPV2 | 0.0 | A0A078JPV2_BRANA; BnaCnng56130D protein | ||||
STRING | Bo9g166450.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7518 | 25 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13790.1 | 1e-121 | AGAMOUS-like 15 |
Publications ? help Back to Top | |||
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