PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00065352001 | ||||||||
Common Name | GSBRNA2T00065352001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HSF | ||||||||
Protein Properties | Length: 440aa MW: 48838.1 Da PI: 4.4638 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.8 | 1.1e-35 | 27 | 119 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 Fl+k+y++++d++++e++sws+ +nsfvv++ ef+k +Lpk+Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k GSBRNA2T00065352001 27 FLSKTYDMVDDPSTNEVVSWSSGNNSFVVWNVPEFSKVLLPKHFKHNNFSSFVRQLNTYGFRKVDPDQ---------WEFANEGFLRGQK 107 9****************************************************************999.........************* PP XXXXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkkse 103 +ll+ i r+k + GSBRNA2T00065352001 108 QLLKGIVRRKPQ 119 ********9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 1.4E-58 | 23 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.63E-34 | 23 | 116 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 3.4E-38 | 23 | 116 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.5E-19 | 27 | 50 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.7E-30 | 27 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.5E-19 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 66 | 90 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.5E-19 | 78 | 90 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
MEPVQSVPSE NSNPPSIPPP VSSVPPFLSK TYDMVDDPST NEVVSWSSGN NSFVVWNVPE 60 FSKVLLPKHF KHNNFSSFVR QLNTYGFRKV DPDQWEFANE GFLRGQKQLL KGIVRRKPQN 120 QQQTQVKNSS AGACVEVGKF GIEEEVERLK HDKNVLMQEL VRLSQQQQAT EHQLQNVGQK 180 VQVMEQRQQQ TMSFLAKAVQ SPGFLNQLVQ QNSDCNKHIQ GSNKKRRLPG DEEESCGELN 240 RQIVKYQPSL NEAAQTMLGQ ILNRSSSTRC ESVSNNPDSF LLDDAHSTNS AHSTMNQVHE 300 AGLVDHPQAV PSPSQGVAAA ASSWSPESEL VGFETGDGVC FDPIMAALGG SLEIESDEVS 360 RVGEGEMTEL QNEVPKLPGV QDSLWEQFFA DEIGEGDDIL SGAVENGDMV MEQEPNEWKQ 420 QEMNHLSEQM ELLSSETRN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 2e-25 | 22 | 116 | 15 | 120 | Heat shock factor protein 1 |
5d5u_B | 2e-25 | 22 | 116 | 24 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-25 | 22 | 116 | 24 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-25 | 22 | 116 | 24 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.10009 | 0.0 | seed |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00065352001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: DNA-binding capacity is reduced by HSBP in vitro. {ECO:0000269|PubMed:20388662}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013621550.1 | 0.0 | PREDICTED: heat stress transcription factor A-1b | ||||
Swissprot | O81821 | 0.0 | HFA1B_ARATH; Heat stress transcription factor A-1b | ||||
TrEMBL | A0A078HI23 | 0.0 | A0A078HI23_BRANA; BnaC02g06880D protein | ||||
STRING | Bra023584.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2236 | 23 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16820.2 | 0.0 | heat shock factor 3 |
Publications ? help Back to Top | |||
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