PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00065147001 | ||||||||
Common Name | GSBRNA2T00065147001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 516aa MW: 57682 Da PI: 6.0643 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.8 | 6.3e-30 | 266 | 323 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK vkg+++prsYY+C+++gC +kk+ver+a+d +++ +tY g+H h GSBRNA2T00065147001 266 NDGHRWRKYGQKIVKGNPNPRSYYKCSHKGCIMKKHVERAADDLRMLLVTYYGKHGHA 323 7******************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.1E-30 | 251 | 325 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.66E-26 | 260 | 325 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.364 | 260 | 325 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.2E-33 | 265 | 324 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.5E-24 | 266 | 322 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 516 aa Download sequence Send to blast |
MSDYGDGNFM DMVSSRWAPP PSTSLSDNGL NPISDIFLQT NQSKQRPGLV DRVAARIGRN 60 IPPIRTDNLS PCAVVFKDPK TVPFGIEISP GLSPSVMLQS RSQLINPYSF PNDEPPETVE 120 NSGDDHAKTM IFNKDVPYQP MHFDLPPQEA LIPSHVDPIG APLVASFESE VADDTDTKLM 180 SLDDESESQD EEESNEDEDT DDPSKLGRKR RIDEEEDDDI ADEHEVKPSS PKRRKYDEVS 240 NMMTALRASN NPRVRLRMET EEAQPNDGHR WRKYGQKIVK GNPNPRSYYK CSHKGCIMKK 300 HVERAADDLR MLLVTYYGKH GHAAPLARSS SSSGPKNLYR SSVPARLGRP PFSSSSAAQD 360 MRSFPYPSAS APRDMKRFGY PSALAPQAMR PFPSSLNPGV DMTHLYKTGL SKLPSLPVNQ 420 NHGFMDQNAE PWVNQNHGFM GQNAEPQVNQ NHGFMAQNAE PWVNQNHGFM GQNAEPRVNQ 480 NHGFMSQNAE PRVNQNHGFM GQNTEPWSNQ NHGFMG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-21 | 266 | 325 | 18 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 6e-21 | 266 | 325 | 18 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00065147001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009147496.1 | 0.0 | PREDICTED: probable WRKY transcription factor 10 | ||||
TrEMBL | A0A078JJ32 | 0.0 | A0A078JJ32_BRANA; BnaAnng24700D protein (Fragment) | ||||
STRING | Bra038006.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20376 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55600.1 | 4e-44 | WRKY DNA-binding protein 10 |
Publications ? help Back to Top | |||
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