PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00064999001
Common NameGSBRNA2T00064999001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 407aa    MW: 46679.5 Da    PI: 6.0461
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00064999001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.5e-11213263754
                          HHHHHHHHHHHHHHHHHHCTSCCC......TTS-STCHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPkas...kapskKlsKaeiLekAveYIksL 54 
                            Er+RR+riN+++  Lr ++P+ +    ++s  ++K  +L  Av+YI++L
  GSBRNA2T00064999001 213 HSERKRRERINQRIYALRAVVPNVTkvlPENSFQMNKNGTLSDAVDYINQL 263
                          57*********************55599999999***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.6E-1510152IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000835.25E-10204268No hitNo description
SuperFamilySSF474594.71E-14204276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.227206263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-12208278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-11212269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-9213263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MMRGGERVKE FLRPFVDSRE WDFCVIWKLG DDPSRFIEWV GCCCSGSYID KNIKHEHVEE  60
ETQNTSSICR DEDNKHHIRT LACEALSRFP LFMPLYPGIH GEVVMSKSPK WLVNSGPGSK  120
QDIFSTRVLV PVRDGLVELF SFIMKPVDES MVDLIISHCN TFVEPYPEKT LPFRIISKAE  180
ESMLMHKEED VVMQNTIDDK KVAKENFKSK NLHSERKRRE RINQRIYALR AVVPNVTKVL  240
PENSFQMNKN GTLSDAVDYI NQLLVEKQKL EDELRGINEI ESRRIAAEEE SAIANPQAEK  300
VASRLNKIVN SEVNLEVHET GERGFLIRIA QEHKQDGFIR LIETVDSCGL EIIDVNFTRL  360
DLRVMTVLNV KATKDGTTPE NLRDLLIKMM MRTSENPNAE SLRQCA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214219ERKRRE
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00064999001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013651521.10.0transcription factor bHLH90-like isoform X2
SwissprotQ0WNR20.0BH090_ARATH; Transcription factor bHLH90
TrEMBLA0A078HKV70.0A0A078HKV7_BRANA; BnaC05g08100D protein
STRINGBo5g012130.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69852742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.10.0bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]