PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00064787001 | ||||||||
Common Name | GSBRNA2T00064787001, LOC106426228 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 359aa MW: 40214.9 Da PI: 4.4925 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38 | 3e-12 | 187 | 230 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++P+ + K++ +iL A++Y+k+L GSBRNA2T00064787001 187 LMAERRRRKRLNDRLSMLRSIVPNiS------KMDRTSILGDAIDYMKEL 230 589*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.974 | 181 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.1E-16 | 184 | 249 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.4E-10 | 187 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.5E-13 | 187 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.60E-5 | 188 | 230 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-16 | 188 | 244 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MELSTQINVF EELLVPTKQE TTDNYNYNTS INNLSFNGGF DHHQLFSNGW NIDYLCFDNE 60 EEDENTLLYS SSFMDLISQP PPLLLHQTPP LPPPSSSSPP LISSTASTFD DPFLEALQEI 120 IDSSSSSPPV MLPTSQEESF INHSSYPSPL VESDQSKSFS VGYCGGVVET TNKKNSKKLE 180 GQPSKNLMAE RRRRKRLNDR LSMLRSIVPN ISKMDRTSIL GDAIDYMKEL LDKINKLQDE 240 EQELVVSNSS HHSKLFGDIK DLNTNEPLVR NSPKFEVDRR DQDTRVEILC SPKPGLLLST 300 VNTLETLGLE IEQCVISCFS DFSLHASCSE VAQQRDFINS EDIKQALFRN AGYGGKCL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 5e-13 | 182 | 255 | 5 | 76 | Transcription factor MYC2 |
5gnj_B | 5e-13 | 182 | 255 | 5 | 76 | Transcription factor MYC2 |
5gnj_E | 5e-13 | 182 | 255 | 5 | 76 | Transcription factor MYC2 |
5gnj_F | 5e-13 | 182 | 255 | 5 | 76 | Transcription factor MYC2 |
5gnj_G | 5e-13 | 182 | 255 | 5 | 76 | Transcription factor MYC2 |
5gnj_I | 5e-13 | 182 | 255 | 5 | 76 | Transcription factor MYC2 |
5gnj_M | 5e-13 | 182 | 255 | 5 | 76 | Transcription factor MYC2 |
5gnj_N | 5e-13 | 182 | 255 | 5 | 76 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 189 | 196 | ERRRRKRL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.9888 | 0.0 | flower| seed| vegetative meristem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:17088607}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00064787001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013722397.1 | 0.0 | transcription factor bHLH93 | ||||
Swissprot | Q9LSL1 | 0.0 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A078HHI7 | 0.0 | A0A078HHI7_BRANA; BnaAnng04960D protein | ||||
TrEMBL | A0A398AGV0 | 0.0 | A0A398AGV0_BRACM; Uncharacterized protein | ||||
STRING | Bra031852.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2043 | 28 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 0.0 | beta HLH protein 93 |
Link Out ? help Back to Top | |
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Entrez Gene | 106426228 |