PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00063377001 | ||||||||
Common Name | GSBRNA2T00063377001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GRAS | ||||||||
Protein Properties | Length: 955aa MW: 106979 Da PI: 6.2882 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 489.3 | 1.8e-149 | 53 | 437 | 1 | 370 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 l++lLl+cA++v+sg+l++a+a+L++ls l+spdgd+mqR+aayfteALa+r+++s+++lykal++++ +++n+see+++++lf++++Pi GSBRNA2T00063377001 53 LIHLLLTCANHVASGSLQNANAALEQLSLLSSPDGDTMQRVAAYFTEALANRILKSWPGLYKALNATQRKTNNVSEEVHVRRLFFDMFPI 142 689*************************************************************************************** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180 lk+s+l++N+aIlea+ege++vH+iD+d+s+++QW+aL+q ++sRpegpp+lRiTgv++ +ke l ++++ L++ Ae+l++pf+fn+ GSBRNA2T00063377001 143 LKVSYLLTNRAILEAMEGEKMVHVIDLDASEPAQWLALIQDFNSRPEGPPHLRITGVHH----HKEVLDQMAHILTEEAEKLDIPFQFNP 228 ***********************************************************....9************************** PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrll..................desvsles..erdevLklvkslsPkvvvvveqeadhns 250 v+++le+l++++L vk+gEalaV++vlqlh++l ++s++l++ +++++L++++slsPk++vv+eq++dhn+ GSBRNA2T00063377001 229 -VVSSLESLNIDQLGVKTGEALAVSSVLQLHNFLasdedilrkngyslsgdsASSLPLPNsgRISRFLNAMWSLSPKIMVVTEQDSDHNG 317 .799**********************************************997777777777999************************* PP GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340 ++++er+le+l++y+alfd+leak+pr+ ++r+kvE++++g+ei+n++aceg+errerhe+lekW++r++ aGF++vpls++a+ q ++l GSBRNA2T00063377001 318 STLMERLLESLYTYAALFDCLEAKVPRTCQDRSKVEKMFFGEEIKNIIACEGSERRERHEKLEKWSQRIDLAGFGNVPLSYFAMLQGRRL 407 ****************************************************************************************** PP GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsv 370 l+ +++dgy+++eesg++v++W+drpL+s+ GSBRNA2T00063377001 408 LQGYGFDGYMIKEESGCAVICWQDRPLYSM 437 ****************************86 PP | |||||||
2 | GRAS | 502.5 | 1.7e-153 | 563 | 951 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 l++lLl+cA++v+sg+l++a+a+L++ls l+spdgd+mqR+aayfteALa+r+++s+++lykal++++ +++n+see+++++lf++++Pi GSBRNA2T00063377001 563 LIHLLLTCANHVASGSLQNANAALEQLSLLSSPDGDTMQRVAAYFTEALANRILKSWPGLYKALNATQRKTNNVSEEVHVRRLFFDMFPI 652 689*************************************************************************************** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180 lk+s+l++N+aIlea+ege++vH+iD+d+s+++QW+aL+q ++sRpegpp+lRiTgv++ +ke l ++++ L++ Ae+l++pf+fn+ GSBRNA2T00063377001 653 LKVSYLLTNRAILEAMEGEKMVHVIDLDASEPAQWLALIQDFNSRPEGPPHLRITGVHH----HKEVLDQMAHILTEEAEKLDIPFQFNP 738 ***********************************************************....9************************** PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrll..................desvsles..erdevLklvkslsPkvvvvveqeadhns 250 v+++le+l++++L vk+gEalaV++vlqlh++l ++s++l++ +++++L++++slsPk++vv+eq++dhn+ GSBRNA2T00063377001 739 -VVSSLESLNIDQLGVKTGEALAVSSVLQLHNFLasdedilrkngyslsgdsASSLPLPNsgRISRFLNAMWSLSPKIMVVTEQDSDHNG 827 .799**********************************************997777777777999************************* PP GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340 ++++er+le+l++y+alfd+leak+pr+ ++r+kvE++++g+ei+n++aceg+errerhe+lekW++r++ aGF++vpls++a+ q ++l GSBRNA2T00063377001 828 STLMERLLESLYTYAALFDCLEAKVPRTCQDRSKVEKMFFGEEIKNIIACEGSERRERHEKLEKWSQRIDLAGFGNVPLSYFAMLQGRRL 917 ****************************************************************************************** PP GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 l+ +++dgy+++eesg++v++W+drpL+svSaWr GSBRNA2T00063377001 918 LQGYGFDGYMIKEESGCAVICWQDRPLYSVSAWR 951 *********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 60.407 | 27 | 421 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.2E-147 | 53 | 437 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 60.407 | 537 | 931 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.8E-151 | 563 | 951 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 955 aa Download sequence Send to blast |
MVVAMLQEDN GTSSVASSPL QVFSTMSLTR PALLSSPSSP FKDLKPEERG LYLIHLLLTC 60 ANHVASGSLQ NANAALEQLS LLSSPDGDTM QRVAAYFTEA LANRILKSWP GLYKALNATQ 120 RKTNNVSEEV HVRRLFFDMF PILKVSYLLT NRAILEAMEG EKMVHVIDLD ASEPAQWLAL 180 IQDFNSRPEG PPHLRITGVH HHKEVLDQMA HILTEEAEKL DIPFQFNPVV SSLESLNIDQ 240 LGVKTGEALA VSSVLQLHNF LASDEDILRK NGYSLSGDSA SSLPLPNSGR ISRFLNAMWS 300 LSPKIMVVTE QDSDHNGSTL MERLLESLYT YAALFDCLEA KVPRTCQDRS KVEKMFFGEE 360 IKNIIACEGS ERRERHEKLE KWSQRIDLAG FGNVPLSYFA MLQGRRLLQG YGFDGYMIKE 420 ESGCAVICWQ DRPLYSMVLG LCFVCLDVSF SESYFSKTAF YLKQKIFLNI KPSHFLLNSF 480 VFLVLSIDAK IKFSGSLKVF RILGLTFWPS MVVAMLQEDN GTSSVASSPL QVFSTMSLTR 540 PALLSSPSSP FKDLKPEERG LYLIHLLLTC ANHVASGSLQ NANAALEQLS LLSSPDGDTM 600 QRVAAYFTEA LANRILKSWP GLYKALNATQ RKTNNVSEEV HVRRLFFDMF PILKVSYLLT 660 NRAILEAMEG EKMVHVIDLD ASEPAQWLAL IQDFNSRPEG PPHLRITGVH HHKEVLDQMA 720 HILTEEAEKL DIPFQFNPVV SSLESLNIDQ LGVKTGEALA VSSVLQLHNF LASDEDILRK 780 NGYSLSGDSA SSLPLPNSGR ISRFLNAMWS LSPKIMVVTE QDSDHNGSTL MERLLESLYT 840 YAALFDCLEA KVPRTCQDRS KVEKMFFGEE IKNIIACEGS ERRERHEKLE KWSQRIDLAG 900 FGNVPLSYFA MLQGRRLLQG YGFDGYMIKE ESGCAVICWQ DRPLYSVSAW RCRK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 1e-64 | 36 | 953 | 1 | 380 | Protein SCARECROW |
5b3h_D | 1e-64 | 36 | 953 | 1 | 380 | Protein SCARECROW |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00063377001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189301 | 0.0 | AC189301.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB030D08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013588129.1 | 0.0 | PREDICTED: scarecrow-like protein 3 | ||||
Refseq | XP_013588130.1 | 0.0 | PREDICTED: scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A078HGZ1 | 0.0 | A0A078HGZ1_BRANA; BnaC06g03620D protein | ||||
STRING | Bo6g022200.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4098 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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