PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00060694001

Common Name

GSBRNA2T00060694001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 151aa MW: 16910.7 Da PI: 7.5035

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00060694001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.5e-05	52	74	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H GSBRNA2T00060694001 52 FSCNYCQRKFYSSQALGGHQNAH 74 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.78E-6	49	79	No hit	No description
PROSITE profile	PS50157	11.094	52	79	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	54	74	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MDFQPNTSLR LSLPSYKNHQ LNLELVLDPS SMSSSSSSST NSSSCLEQPR VFSCNYCQRK 60 FYSSQALGGH QNAHKLERTL AKKSRELFRS STTVDVDQPY PFSGRFELYG RGYEGFVESG 120 GPRDFSGRRV PESGIDQDQE MSHLDLSLRL *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed at in the abscission zone (AZ) of petals, stamens, sepals and siliques. Expressed at lower levels in stamens, carpels, cotyledons, major veins of rosette leaves, trichomes of inflorescence leaves and stems. {ECO:0000269\|PubMed:18192438}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269\|PubMed:18192438}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00060694001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB011482	1e-146	AB011482.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUA2.
GenBank	ATHZFPB	1e-146	L39645.1 Arabidopsis thaliana zinc finger protein 2 (ZFP2) mRNA, complete cds.
GenBank	CP002688	1e-146	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009132121.1	1e-106	PREDICTED: zinc finger protein 2
Refseq	XP_013627204.1	1e-106	PREDICTED: zinc finger protein 2
Refseq	XP_013740323.1	1e-106	zinc finger protein 2
Refseq	XP_022554540.1	1e-106	zinc finger protein 2-like
Refseq	XP_022554547.1	1e-106	zinc finger protein 2-like
Swissprot	Q39261	2e-89	ZFP2_ARATH; Zinc finger protein 2
TrEMBL	A0A078FFX0	1e-105	A0A078FFX0_BRANA; BnaC03g12900D protein
TrEMBL	A0A0D3B2Z7	1e-105	A0A0D3B2Z7_BRAOL; Uncharacterized protein
TrEMBL	A0A397ZTX3	1e-105	A0A397ZTX3_BRACM; Uncharacterized protein
TrEMBL	A0A3P6A550	1e-105	A0A3P6A550_BRACM; Uncharacterized protein
TrEMBL	A0A3P6AJV1	1e-105	A0A3P6AJV1_BRAOL; Uncharacterized protein
TrEMBL	M4CRH4	1e-105	M4CRH4_BRARP; Uncharacterized protein
STRING	Bra006815.1-P	1e-106	(Brassica rapa)
STRING	Bo3g019270.1	1e-106	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6621	28	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57520.1	1e-89	zinc finger protein 2

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]