PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00058389001
Common NameGSBRNA2T00058389001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 412aa    MW: 45149.4 Da    PI: 9.3303
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00058389001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.82.6e-1365121155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  GSBRNA2T00058389001  65 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 121
                          57*******************6666777775555599******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.7E-965121IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-1565130IPR016177DNA-binding domain
PROSITE profilePS5103218.54566129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-1266130IPR001471AP2/ERF domain
SMARTSM003801.6E-1966135IPR001471AP2/ERF domain
PRINTSPR003673.8E-56778IPR001471AP2/ERF domain
PRINTSPR003673.8E-5111131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MASMSSPDQG PKTEAGGGGE SSENVSASDQ MLMYRSFKKA KKERGCTAKE RISKMPPCTA  60
GKRSSIYRGV TRHRWTGRYE AHLWDKSTWN QNQNKKGKQG AYDDEEAAAR AYDLAALKYW  120
GPGTIINFPV TDYSRDLEEM QSLSREEYLA TLRRKSSGFS RGIAKYRGLQ SRWEASASRM  180
PGPEYFSNLH YGTGDDRGAE GDFLGSFCLE RKIDLTGYIK WWGVNKPRQP ESSSKASEDA  240
KVEDAGSELK TLEHTSQATE PYKAPNLGVL QRKEKQIASP SSTSSALSIL SASPAYKSLE  300
EKVMKIQESS STRENDENAN RNITKKPAVS HGVALGSGGG VAPAAALSLQ KSMYPLSSLL  360
TAPLLSNYNA LDPLGDRILW TPFLPPGSSH TSEVTKTETS CSTYSYLPQE K*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00058389001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535340.0AK353534.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-D01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133509.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X2
RefseqXP_013724307.10.0AP2-like ethylene-responsive transcription factor At2g41710 isoform X2
SwissprotQ8GWK20.0AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A078HC800.0A0A078HC80_BRANA; BnaA03g19580D protein
STRINGBra000237.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108152433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.10.0AP2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]