PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00058357001 | ||||||||
Common Name | GSBRNA2T00058357001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 269aa MW: 30724.3 Da PI: 7.7409 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32 | 2.8e-10 | 142 | 185 | 5 | 48 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 kr +r NR +A+rsR RK+++i eLe+ + +L++e + L + GSBRNA2T00058357001 142 KRVKRILANRQSAQRSRVRKLQYISELERSITSLQSEVSVLSPR 185 8999********************************98777655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.9E-12 | 138 | 202 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.542 | 140 | 192 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.3E-12 | 142 | 193 | No hit | No description |
Pfam | PF00170 | 1.9E-8 | 142 | 185 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.98E-11 | 142 | 196 | No hit | No description |
CDD | cd14703 | 8.67E-22 | 143 | 193 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 145 | 160 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MAQLPPKIPN MTPHWPDFSQ KLSHFSTVAA SSAFLDFSAC RRGNHRRSIS DSIAFLEAPI 60 VTSNMEEHNF DKFDDEQFMS MFTEDDDDLR NNPSHNNKNV GPNTNNNRND EVRSQCKTEP 120 EDGTASSNNS GDSSSNRIID PKRVKRILAN RQSAQRSRVR KLQYISELER SITSLQSEVS 180 VLSPRVAFLD HQRLLLNVDN SALKQRIAAL AQDKIFKDTH QESLKREIER LRQVYQQQSF 240 KKMENANHLP ETGVDIKLSI EKEQMLNI* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in vascular tissues of leaves, stems and siliques, anthers, filaments, tapetum, mature pollen grains, pistil vascular tissues and papillar cells, and funiculi. {ECO:0000269|PubMed:19449183}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in the sporophytic control of cell wall patterning and gametophytic control of pollen development. May play a role in the control of metabolic pathways regulating cellular transport and lipid metabolism. {ECO:0000269|PubMed:17719007, ECO:0000269|PubMed:19449183}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00058357001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY074657 | 1e-141 | AY074657.1 Arabidopsis thaliana At2g42380/MHK10.10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013724301.1 | 1e-180 | basic leucine zipper 34-like | ||||
Swissprot | F4IN23 | 1e-136 | BZP34_ARATH; Basic leucine zipper 34 | ||||
TrEMBL | A0A078HD62 | 0.0 | A0A078HD62_BRANA; BnaA03g19810D protein | ||||
STRING | XP_006411496.1 | 1e-137 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1753 | 27 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42380.2 | 1e-128 | bZIP family protein |
Publications ? help Back to Top | |||
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