PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00057441001
Common NameGSBRNA2T00057441001, LOC106419890
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 385aa    MW: 44113.6 Da    PI: 5.697
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00057441001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.63e-10206248754
                          HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            Er+RR+riN+++  Lr ++P       +K++K  +   Av+YI++L
  GSBRNA2T00057441001 206 HSERKRRERINQRIYALRAIVPVI-----TKMNKNGTISDAVDYINEL 248
                          57*********************7.....7***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-179155IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.01E-10197253No hitNo description
SuperFamilySSF474591.44E-14198261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.526199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-11205254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-12206262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-8206248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MMRGVERVKE VLRPLVDSRD WDFCVIWKLG DDPSRFIEWV GCCCSGSYTD KNIKHENVEE  60
EEERQKMSSI CRDEHNKHHI RSLACEALSR FPLFIPLYPG IHGEVVISKS PKWLVNSSPG  120
SKHDIFRTRV LVPVRDGLVE LFSFTMKPVD ESMVDLIISR CNAFFEPFTE QTLPCMDQAP  180
CLVMNKEEDV VMQDMTKENF KSKNLHSERK RRERINQRIY ALRAIVPVIT KMNKNGTISD  240
AVDYINELLV EKQKLEDELS GINEVECRAE EEAVIANPEA EKVSSKLNKN VNNEVNLEVH  300
ETGEGDFLIR VTQEHKRDGF KRLIEAVESC GLEIINVSFT RLDLTVMTIL NVKANKDGIT  360
REDLRDLLFR MIITSVAGSV KHCT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207212ERKRRE
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00057441001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013716187.10.0transcription factor bHLH90
RefseqXP_022547279.10.0transcription factor bHLH90-like
SwissprotQ0WNR20.0BH090_ARATH; Transcription factor bHLH90
TrEMBLA0A078HDG50.0A0A078HDG5_BRANA; BnaA09g48040D protein
STRINGBra031723.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69852742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.10.0bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]