PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00057235001
Common NameGSBRNA2T00057235001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 339aa    MW: 38149.3 Da    PI: 5.2945
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00057235001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.59.4e-48191442128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                           pGf+F+Ptd el+++yLk+k++g + ++ e+i+e+diy++ePwdLp k+v ++e+ew+fF+ r kky++g++++ratk gyWkatgk++
  GSBRNA2T00057235001  19 FPGFKFSPTDIELISYYLKRKMDGLEGSV-EIIPELDIYNFEPWDLPdKSVVKSESEWFFFCARGKKYPHGSQNRRATKMGYWKATGKER 107
                          59************************999.89***************777777899********************************** PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +v+s ++e++g+k+tLvf+ grapkg +t+W+mhey +
  GSBRNA2T00057235001 108 NVKS-GSEVIGTKRTLVFHIGRAPKGGRTEWLMHEYCM 144
                          ****.9******************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-528159IPR003441NAC domain
PROSITE profilePS5100550.72618160IPR003441NAC domain
PfamPF023652.4E-2420143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MAEASRDTSV VSVAVSTAFP GFKFSPTDIE LISYYLKRKM DGLEGSVEII PELDIYNFEP  60
WDLPDKSVVK SESEWFFFCA RGKKYPHGSQ NRRATKMGYW KATGKERNVK SGSEVIGTKR  120
TLVFHIGRAP KGGRTEWLMH EYCMIGISLD ALVVCRLRRN TEFQGATTQK PPSLSLDKNK  180
NMQSEPVSES KSGWENNMFD YYLSGESGHE LLSEITESSQ SSHNPQVPSE EDFYADILRD  240
DIVKLDDPAD SGNTLIDVPR LQSESTTTRV LPLPSMVDKQ MQSLLQKLPL QNDIGEENNI  300
SMSSCFIGIY SIKSINRARW DVVAWVLVMI AVLVFYLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A7e-422016022168NAC domain-containing protein 19
3swm_B7e-422016022168NAC domain-containing protein 19
3swm_C7e-422016022168NAC domain-containing protein 19
3swm_D7e-422016022168NAC domain-containing protein 19
3swp_A7e-422016022168NAC domain-containing protein 19
3swp_B7e-422016022168NAC domain-containing protein 19
3swp_C7e-422016022168NAC domain-containing protein 19
3swp_D7e-422016022168NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcription factor involved in modulation of abscisic acid (ABA) signaling. Attenuates ABA sensitivity and glucose-induced ABA accumulation. Reduces the expression of ABI4 gene. {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:24625790}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00057235001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By glucose (PubMed:24625790). Induced by salt, drought stress and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:24625790}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747630.0KF974763.1 Brassica napus NAC transcription factor 60-1 (NAC60-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009117877.10.0PREDICTED: NAC domain-containing protein 60
SwissprotQ9LXL90.0NAC60_ARATH; NAC domain-containing protein 60
TrEMBLA0A078HB430.0A0A078HB43_BRANA; BnaA01g33110D protein
STRINGBra021471.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43092356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44290.10.0NAC domain containing protein 60
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]