PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00055796001

Common Name

GSBRNA2T00055796001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ZF-HD

Protein Properties

Length: 270aa MW: 30087.7 Da PI: 6.7921

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00055796001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	98.6	4.6e-31	66	119	3	57
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 ++r++eClkN+A+++GghavDGCgE+mp+ g egt++alkCaACgCHRnFHR+e+ GSBRNA2T00055796001 66 RFRFRECLKNQAVNIGGHAVDGCGEYMPA-GIEGTIEALKCAACGCHRNFHRKES 119 689***********************9.999******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	7.0E-28	67	119	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	5.9E-28	68	118	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	24.958	69	118	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-22	71	118	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	4.6E-30	165	240	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.28E-18	169	240	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.6E-26	179	235	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MDFEEEINLH EEEEEEDALY DSPPLPPPSR VLKASTESPD TAGTTSTGEG GYMVAHGGSS 60 FGGGGRFRFR ECLKNQAVNI GGHAVDGCGE YMPAGIEGTI EALKCAACGC HRNFHRKESL 120 YFHHLAPPPP PPPGFYRLPA PVRYRPPPSQ APPLQLALPQ RERSEDRMET SSAEAGGIRK 180 RFRTKFTAEQ KERMLGLAER IGWRIQRQDD EVIQRFCQET GVPRQVLKVW LHNNKHTLGK 240 SLSPPLHHHQ NPTLPPHESS SFHHEQDQP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh5_A	6e-35	178	237	16	75	ZF-HD homeobox family protein
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.6369	1e-125	flower\| seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00055796001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353495	0.0	AK353495.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-46-M17.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013613607.1	0.0	PREDICTED: zinc-finger homeodomain protein 1-like isoform X1
Refseq	XP_013613609.1	0.0	PREDICTED: zinc-finger homeodomain protein 1-like isoform X2
Swissprot	Q9FKP8	1e-120	ZHD1_ARATH; Zinc-finger homeodomain protein 1
TrEMBL	A0A078H5X6	0.0	A0A078H5X6_BRANA; BnaC02g43770D protein
STRING	Bra031859.1-P	1e-160	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13237	17	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65410.1	1e-103	homeobox protein 25

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]