PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00054888001
Common NameGSBRNA2T00054888001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 355aa    MW: 38953.5 Da    PI: 6.0829
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00054888001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.74.9e-14164210354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++h+e+ErrRR+riN+ +++Lr++lP+      +K +Ka+ L ++++++k+L
  GSBRNA2T00054888001 164 KSHSEAERRRRERINNHLAKLRSILPNT-----TKTDKASLLAEVIQHVKEL 210
                          79*************************9.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.85161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-11164210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-14165219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-14165220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-12167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.37E-5174213No hitNo description
Gene3DG3DSA:3.30.70.2600.001250305No hitNo description
CDDcd048734.08E-6250319No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MCAKKEEVES SGAMNNIGNY QSDLFFHQLI SPNHHQDPSQ SESFGGPSNN VGSGSTIFSQ  60
DSVSPIWPTL VQPPFDPFPP PSPASFYGSF FHRSRAHHQG LQFGYEGFGG ATPATHHHHE  120
QLRILSEALG PVVQAGSGPF GLQAELGKMT AQEIMDAKAL AASKSHSEAE RRRRERINNH  180
LAKLRSILPN TTKTDKASLL AEVIQHVKEL KKETSVISET NLVPTENDEL TVAFTEEEET  240
GDGRFVIKAS LCCEDRSDLL PDMIKTLKAM RLKTLKAEIT TVGGRVKNVL FVTGDESSGE  300
EEMEEYCIGT IEEALKAVMD KSSVEETSSS GNAKRQRMSS HNSITILEQQ QHHR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169174ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00054888001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0721610.0AY072161.1 Arabidopsis thaliana putative DNA-binding protein (At1g68810) mRNA, complete cds.
GenBankAY1229830.0AY122983.1 Arabidopsis thaliana putative DNA-binding protein (At1g68810) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013589895.10.0PREDICTED: transcription factor bHLH30
SwissprotQ9S7Y10.0BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A078H8020.0A0A078H802_BRANA; BnaC06g29600D protein
TrEMBLA0A0D3CZ270.0A0A0D3CZ27_BRAOL; Uncharacterized protein
TrEMBLA0A3P6GCM60.0A0A3P6GCM6_BRAOL; Uncharacterized protein
STRINGBo6g108270.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70482843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-179bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]