PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00054888001 | ||||||||
Common Name | GSBRNA2T00054888001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 355aa MW: 38953.5 Da PI: 6.0829 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.7 | 4.9e-14 | 164 | 210 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr++lP+ +K +Ka+ L ++++++k+L GSBRNA2T00054888001 164 KSHSEAERRRRERINNHLAKLRSILPNT-----TKTDKASLLAEVIQHVKEL 210 79*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.85 | 161 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-11 | 164 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-14 | 165 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-14 | 165 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-12 | 167 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.37E-5 | 174 | 213 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 0.001 | 250 | 305 | No hit | No description |
CDD | cd04873 | 4.08E-6 | 250 | 319 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MCAKKEEVES SGAMNNIGNY QSDLFFHQLI SPNHHQDPSQ SESFGGPSNN VGSGSTIFSQ 60 DSVSPIWPTL VQPPFDPFPP PSPASFYGSF FHRSRAHHQG LQFGYEGFGG ATPATHHHHE 120 QLRILSEALG PVVQAGSGPF GLQAELGKMT AQEIMDAKAL AASKSHSEAE RRRRERINNH 180 LAKLRSILPN TTKTDKASLL AEVIQHVKEL KKETSVISET NLVPTENDEL TVAFTEEEET 240 GDGRFVIKAS LCCEDRSDLL PDMIKTLKAM RLKTLKAEIT TVGGRVKNVL FVTGDESSGE 300 EEMEEYCIGT IEEALKAVMD KSSVEETSSS GNAKRQRMSS HNSITILEQQ QHHR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 169 | 174 | ERRRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00054888001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY072161 | 0.0 | AY072161.1 Arabidopsis thaliana putative DNA-binding protein (At1g68810) mRNA, complete cds. | |||
GenBank | AY122983 | 0.0 | AY122983.1 Arabidopsis thaliana putative DNA-binding protein (At1g68810) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013589895.1 | 0.0 | PREDICTED: transcription factor bHLH30 | ||||
Swissprot | Q9S7Y1 | 0.0 | BH030_ARATH; Transcription factor bHLH30 | ||||
TrEMBL | A0A078H802 | 0.0 | A0A078H802_BRANA; BnaC06g29600D protein | ||||
TrEMBL | A0A0D3CZ27 | 0.0 | A0A0D3CZ27_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6GCM6 | 0.0 | A0A3P6GCM6_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g108270.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7048 | 28 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 1e-179 | bHLH family protein |
Publications ? help Back to Top | |||
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