PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00052027001
Common NameGSBRNA2T00052027001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 331aa    MW: 36716.9 Da    PI: 6.2917
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00052027001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.26.1e-08241281954
                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           r+RR+r+ +++  L++l+P       +K++ a++L +A +Y+k L
  GSBRNA2T00052027001 241 ARQRRERVSEKIRVLQTLVPGG-----TKMDTASMLDEAANYLKFL 281
                          69******************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.767232281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-13237295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.73E-10238286No hitNo description
SMARTSM003532.4E-12238287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-11240290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-5241281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEGLESVYAQ AIYGMTRESK IMEHQGSDLI WGGNDLSRCF MSDIGIIGET QHHQHVGNRA  60
SSIDPSSIDC LLSATTNSNN TSTEDDEGIS VLFSDCHTLW SFGGVSSAES ENREITTETT  120
TTKPKSSKRS RDETGSYFCL VGHPQEESEK GNFKLIYDEN QSKSKKPRTE KDRVGSSNIS  180
FQQHSASLSD NVEPDAEAIA QMKEMIYTAA AFRPVNLGLE VVEKPKRKNV KISTDPQTVA  240
ARQRRERVSE KIRVLQTLVP GGTKMDTASM LDEAANYLKF LRAQVKALEN LRPKLDPANF  300
SFSSPSSYPL VHPSFLPFQN PNQVHHHQEC *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241246RQRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.239550.0vegetative meristem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00052027001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886171e-161AF488617.1 Arabidopsis thaliana clone bHLH087 putative bHLH transcription factor mRNA, complete cds.
GenBankAP0013051e-161AP001305.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MHC9.
GenBankBT0203641e-161BT020364.1 Arabidopsis thaliana At3g21330 gene, complete cds.
GenBankCP0026861e-161CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627418.10.0PREDICTED: transcription factor bHLH87-like
RefseqXP_013681209.10.0transcription factor bHLH87-like
SwissprotQ8S3D20.0BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A078H6I50.0A0A078H6I5_BRANA; BnaC03g42070D protein
STRINGBo3g078540.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79602641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.11e-180bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]