PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00051027001

Common Name

GSBRNA2T00051027001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 373aa MW: 42063 Da PI: 7.6093

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00051027001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99	3.2e-31	192	246	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LH++F+e+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+ GSBRNA2T00051027001 192 KTRIRWTQDLHDKFLECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRI 246 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.326	189	249	IPR017930	Myb domain
SuperFamily	SSF46689	3.58E-17	189	246	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-27	191	247	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.4E-24	192	247	IPR006447	Myb domain, plants
Pfam	PF00249	2.9E-8	196	245	IPR001005	SANT/Myb domain
Pfam	PF14379	4.0E-20	276	323	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MDNNFESSNA SQGSRLQLHP QPPQPFNLQD VDTIHYSQTS PWTTETFSGF TPYDCIANQS 60 FSLQCSSSKP YPPSLHSYDH QSSDPPSLDQ SQSMVPMQPS PDQYLKPLYK RSCVNDFAAT 120 NASSASYSLC FGASQDPQEI CRGNYSNSNV TQLSFSLSHH QPKQTHSRFS SPSFSTYGGS 180 MVRNYGTVTG NKTRIRWTQD LHDKFLECVN RLGGADKATP KAILKLMDSE GLTIFHVKSH 240 LQKYRIAKYI PDPREGKFEK RSCSKELSQL DTKTGVQIKE ALQLQLDVQR HLHEQLEIQR 300 NLQVRIEEQG KQLKLMIEQQ QKTKESLLKS PNAEVSLPLS AFDRSPPPFS LQDAEAMMLP 360 SYEDTHFQSK IS*

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MDNNFESSNA SQGSRLQLHP QPPQPFNLQD VDTIHYSQTS PWTTETFSGF TPYDCIANQS  60
FSLQCSSSKP YPPSLHSYDH QSSDPPSLDQ SQSMVPMQPS PDQYLKPLYK RSCVNDFAAT  120
NASSASYSLC FGASQDPQEI CRGNYSNSNV TQLSFSLSHH QPKQTHSRFS SPSFSTYGGS  180
MVRNYGTVTG NKTRIRWTQD LHDKFLECVN RLGGADKATP KAILKLMDSE GLTIFHVKSH  240
LQKYRIAKYI PDPREGKFEK RSCSKELSQL DTKTGVQIKE ALQLQLDVQR HLHEQLEIQR  300
NLQVRIEEQG KQLKLMIEQQ QKTKESLLKS PNAEVSLPLS AFDRSPPPFS LQDAEAMMLP  360
SYEDTHFQSK IS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-22	192	249	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-22	192	249	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-22	192	249	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-22	192	249	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-22	192	249	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-22	192	249	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-22	192	249	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-22	192	249	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00051027001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009130962.1	0.0	PREDICTED: myb family transcription factor PHL5-like
Swissprot	Q0WVU3	0.0	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	A0A078JHF3	0.0	A0A078JHF3_BRANA; BnaA03g55680D protein
STRING	Bra005912.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5476	27	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	0.0	G2-like family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]