PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00048183001 | ||||||||
Common Name | GSBRNA2T00048183001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 271aa MW: 29781.7 Da PI: 10.5578 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 237 | 1.4e-72 | 90 | 270 | 117 | 301 |
GAGA_bind 117 pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidl.vlngvslDe 205 pq e+ + + +l +p++ ++++ k+++ +++k++++k ++kk+ +++k +k+ s ++ k+ekk+ d+ v++ s+D GSBRNA2T00048183001 90 PQAEPAELAVVPQVHLFPPPTRGYIHDVE--LKSSTMLSPSKALKPKPQSKKR--SAPKTPKKTLSI-PEIKREKKNPDInVVDISSFDV 174 55555555555555555555444333332..2333345667777777777766..444444444444.689*********889999**** PP GAGA_bind 206 stlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtn 295 s++P+PvCsCtG++++CYkWG+GGWqS+CCt++iS++PLP+st+r+g+R+agrKmS+ga+ klL + a+eGydl +pvDL++hWA+HGtn GSBRNA2T00048183001 175 SGVPPPVCSCTGVPKVCYKWGMGGWQSSCCTISISTFPLPMSTTRPGTRLAGRKMSNGAYVKLLMRHAGEGYDLTCPVDLRNHWARHGTN 264 ****************************************************************************************** PP GAGA_bind 296 kfvtir 301 kfvti+ GSBRNA2T00048183001 265 KFVTIK 270 *****8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 1.4E-77 | 19 | 270 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 6.2E-64 | 119 | 270 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MGLAISFVIS SGFAKFHSND SRKIKKKLFR EGAILPLKQA IEMDPYLSRN HMKPATSTSK 60 DTGLPTSNPL WFHSYFPVPR TTGIDLSQPP QAEPAELAVV PQVHLFPPPT RGYIHDVELK 120 SSTMLSPSKA LKPKPQSKKR SAPKTPKKTL SIPEIKREKK NPDINVVDIS SFDVSGVPPP 180 VCSCTGVPKV CYKWGMGGWQ SSCCTISIST FPLPMSTTRP GTRLAGRKMS NGAYVKLLMR 240 HAGEGYDLTC PVDLRNHWAR HGTNKFVTIK * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.8379 | 0.0 | seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in anthers, in pollen grains, in young rosette, in leaf vasculature, in the lateral and primary roots, in embryo sac, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00048183001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018513635.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE7 isoform X2 | ||||
Swissprot | O82286 | 1e-110 | BPC7_ARATH; Protein BASIC PENTACYSTEINE7 | ||||
TrEMBL | A0A078JDV9 | 0.0 | A0A078JDV9_BRANA; BnaA03g56400D protein | ||||
STRING | Bra023013.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13674 | 21 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35550.1 | 1e-128 | basic pentacysteine 7 |
Publications ? help Back to Top | |||
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