PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00045599001
Common NameGSBRNA2T00045599001, GSBRNA2T00098541001, LOC106356658, LOC106422861
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 93aa    MW: 10522.9 Da    PI: 9.3615
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00045599001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH223e-0722591854
                         HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                         +   +Lr++lP+   + +s K+s + +L+++++YI++L
  GSBRNA2T00045599001 22 DLVTKLRQILPEiGQRRRSDKVSASKVLQETCNYIRNL 59
                         66679*******999*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.978459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-71975IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-72081IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-42059IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MSNRRSRQSS SAPRISDDQI IDLVTKLRQI LPEIGQRRRS DKVSASKVLQ ETCNYIRNLN  60
REVDNLSERL AQLLESVDED SPQAAVIRSL LM*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00045599001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590340.13e-58PREDICTED: transcription factor PRE1
RefseqXP_013651848.13e-58transcription factor PRE1
RefseqXP_013651849.13e-58transcription factor PRE1
RefseqXP_013719104.13e-58transcription factor PRE1
SwissprotQ9LJX13e-50PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A078JFU26e-57A0A078JFU2_BRANA; BnaC06g42240D protein
TrEMBLA0A0D3CSZ66e-57A0A0D3CSZ6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AX916e-57A0A3P6AX91_BRACM; Uncharacterized protein
TrEMBLA0A3P6G9216e-57A0A3P6G921_BRAOL; Uncharacterized protein
STRINGBo6g063200.11e-57(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.11e-52bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]