PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00045077001
Common NameGSBRNA2T00045077001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 308aa    MW: 33335.7 Da    PI: 8.1633
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00045077001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.95e-10241286655
                          HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR ri  ++ +L+el+P+ +        s ae+L +A e+Ik Lq
  GSBRNA2T00045077001 241 SIAERDRRTRISGKLKKLQELVPNiD-----NQTSYAEMLDLAAEHIKGLQ 286
                          689*********************55.....789****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.491235285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-14238297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.62E-10239290No hitNo description
Gene3DG3DSA:4.10.280.104.7E-12240296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-7241286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-11241291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MYRRSSSKST APDCGDAENN PYDETSGGFS SLGSQTHHNL PPPPRQQHNP NVVGFGHHLS  60
GEPSTIGHSG ASSSSSSLFR HRSSPAGFYD QLLPTEPNGF SLGQPNGGYG GGRGEERGLS  120
RLKSEQRFSG GSSSNYQEHN SLPRISEVHA AAAAINSATS TSMSFGNDSN IWDRSSSQIS  180
FTIDEPGKRS KTTDFFTLET QFSMPQTSLE MARMESLMNI PEGSVPCRVR AKRGCATHPR  240
SIAERDRRTR ISGKLKKLQE LVPNIDNQTS YAEMLDLAAE HIKGLQHQVE SLEKGMEGCT  300
CGACKKR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00045077001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142170.10.0PREDICTED: transcription factor bHLH129-like isoform X1
RefseqXP_009142171.10.0PREDICTED: transcription factor bHLH129-like isoform X1
SwissprotQ9ZW811e-117BH129_ARATH; Transcription factor bHLH129
TrEMBLA0A078GZ070.0A0A078GZ07_BRANA; BnaA04g24850D protein
STRINGBra037732.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103291833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43140.21e-119bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]