PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00043949001 | ||||||||
Common Name | GSBRNA2T00043949001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 401aa MW: 44857 Da PI: 7.6194 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 113.6 | 2e-35 | 42 | 194 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...........lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74 lp+G++F+Ptd+elv e+L++kv+gk+ + + +i+ +i++++P++Lp v+++ + +fF+k +++y+tg+rk GSBRNA2T00043949001 42 LPAGVKFDPTDQELV-EHLEAKVKGKEgnkkwfpshplI---DefipTIDGEdGICYTHPQKLP-GVTKDGLSKHFFHKPSRAYTTGTRK 126 799************.99*********887777765432...133223555535**********.555666799**************** PP NAM 75 nra.............tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +r+ ++ +W++tgk+++v+ +g++ g+kk+Lv+y g+++++ekt+Wvmh+y+l GSBRNA2T00043949001 127 RRKiiqtehdseltgsSSETRWHKTGKTRPVMI-NGRQRGCKKILVLYtnFGKNRRPEKTNWVMHQYHL 194 **8899999999987766889************.999***********5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.59E-38 | 34 | 213 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.516 | 42 | 213 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.1E-16 | 43 | 194 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MKNTCNLIDS KLEEHHYLCG SKHCPGCGRM IQAATKPNWF GLPAGVKFDP TDQELVEHLE 60 AKVKGKEGNK KWFPSHPLID EFIPTIDGED GICYTHPQKL PGVTKDGLSK HFFHKPSRAY 120 TTGTRKRRKI IQTEHDSELT GSSSETRWHK TGKTRPVMIN GRQRGCKKIL VLYTNFGKNR 180 RPEKTNWVMH QYHLGINEEE REGELVVSKI FYQTQPRQCV GNISWSEQNV SSKGLIGTGA 240 GDEICGVAAA LQSLGSGDVI SRVNTNPFTR ALDEGTAEAS KARENRLVSG TCEGVHDGII 300 RSSSSTSYHM IHDHNQHHQT GERREFHIPS SSSYHESIFN ITSTVPFQQQ QLRGRSSGSG 360 LEDLIMGCTS TCTEEENSEA NPQQNADWLT FPPSWYDQSY * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00043949001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009120171.1 | 0.0 | PREDICTED: NAC domain-containing protein 73 isoform X1 | ||||
Refseq | XP_009120172.1 | 0.0 | PREDICTED: NAC domain-containing protein 73 isoform X1 | ||||
Refseq | XP_018510751.1 | 0.0 | PREDICTED: NAC domain-containing protein 73 isoform X1 | ||||
Swissprot | Q9M0F8 | 1e-116 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A0A078JBJ9 | 0.0 | A0A078JBJ9_BRANA; BnaAnng19940D protein | ||||
STRING | Bo9g126190.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14928 | 17 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56620.1 | 0.0 | NAC domain containing protein 99 |
Publications ? help Back to Top | |||
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