PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00039316001 | ||||||||
Common Name | GSBRNA2T00039316001, LOC106395033 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 94aa MW: 10803.3 Da PI: 9.332 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.4 | 1.9e-06 | 26 | 60 | 21 | 54 |
HHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 21 eeLrellPk.askapskKlsKaeiLekAveYIksL 54 +Lr+ lP+ + + +s K+s + +L+ +++YI++L GSBRNA2T00039316001 26 GKLRQFLPEiRERRRSDKVSASKVLQDTCNYIRKL 60 69*******999*********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.88 | 5 | 60 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.7E-6 | 21 | 74 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-6 | 25 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 94 aa Download sequence Send to blast |
MSNRIRSRQS SSATRISDDQ MIDLVGKLRQ FLPEIRERRR SDKVSASKVL QDTCNYIRKL 60 HREVDNLSDR LSLLLDSVDE DSQEAAVIRN LLM* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00039316001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT024640 | 2e-90 | BT024640.1 Arabidopsis thaliana unknown protein (At3g28857) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013691017.1 | 4e-59 | transcription factor PRE5-like | ||||
Swissprot | Q9LJX1 | 6e-51 | PRE5_ARATH; Transcription factor PRE5 | ||||
TrEMBL | A0A078JC25 | 9e-58 | A0A078JC25_BRANA; BnaCnng42180D protein | ||||
TrEMBL | A0A3P6E3N5 | 9e-58 | A0A3P6E3N5_BRAOL; Uncharacterized protein | ||||
STRING | AT3G28857.1 | 3e-49 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM259 | 28 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28857.1 | 9e-39 | bHLH family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106395033 |
Publications ? help Back to Top | |||
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