PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00038269001
Common NameGSBRNA2T00038269001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 359aa    MW: 40251.5 Da    PI: 7.1314
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00038269001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.4e-05199218120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          ++Cp C k+F+r  n++ H+
  GSBRNA2T00038269001 199 FSCPLCFKTFNRYNNMQMHM 218
                          89*****************9 PP
2zf-C2H212.90.00032283305123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C  Cgk F  k + ++H +++
  GSBRNA2T00038269001 283 FACRRCGKAFAVKGDWRTHEKNC 305
                          78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.66199226IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.0E-5199218IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280201221IPR007087Zinc finger, C2H2
SuperFamilySSF576673.75E-6269303No hitNo description
Gene3DG3DSA:3.30.160.609.9E-6270303IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.767283303IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MSDPACIFSN GFLDNYDYSF NYSTSLSHIY NSNGSFYSSN TTKINPNSTS PDSPPLREAL  60
PLLSLSPIHK HKAASVSHHE YYFMETTEQS STSNFLDHDL GQCQETQHHD VTVDLHLGLT  120
NLGGDAIACG GGGSSSSDAI LDSTDQEHHH DLHQDRHQYP EVEVTLVSDH DGHGGVQRGI  180
HHHYWIPTPS QILMGPTQFS CPLCFKTFNR YNNMQMHMWG HGSQYRKGPE SLRGTQPTAM  240
LRLSCYCCAP GCKNNINHPR ARPLKDFRTL QTHYKRKHGA RPFACRRCGK AFAVKGDWRT  300
HEKNCGKLWY CSCGSDFKHK RSLKDHVKAF GNGHVPCFGN DCFGDHEDEA ASDVEHQE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.146001e-171seed
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00038269001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3118111e-179AJ311811.2 Arabidopsis thaliana mRNA for WIP4 protein (At3g20880 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013594912.10.0PREDICTED: zinc finger protein WIP4-like
RefseqXP_013682397.10.0zinc finger protein WIP4-like
SwissprotQ8W0300.0ZWIP4_ARATH; Zinc finger protein WIP4
TrEMBLA0A078GQF90.0A0A078GQF9_BRANA; BnaC01g32390D protein
STRINGBo1g108560.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20880.10.0WIP domain protein 4
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]