PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00036781001 | ||||||||
Common Name | GSBRNA2T00036781001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB_related | ||||||||
Protein Properties | Length: 322aa MW: 36029.6 Da PI: 7.5661 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.1 | 3.1e-16 | 55 | 99 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E+e++v+a k++G W++I +++g ++t+ q++s+ qk+ GSBRNA2T00036781001 55 REKWTEAEHEKFVEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 99 789*****************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.05E-15 | 49 | 103 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.705 | 50 | 104 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.7E-16 | 53 | 102 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.6E-12 | 54 | 102 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-9 | 55 | 95 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.9E-13 | 55 | 98 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.42E-9 | 57 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MVQNLISDES FSSTTMVMQE HCESLCDRAS DELIISSTDA FCLKTRKPYT ITKQREKWTE 60 AEHEKFVEAL KLYGRAWRRI EEHVGTKTAV QIRSHAQKFF TKVARDCGVT SEKSIEIPPP 120 RPKRKPMHPY PRKLVIPDAK EIAYAAITGG KLVPDEDNRS PTSVLSAHGS DGFGSNSPNS 180 SSADYQVHEL SSHTEESLSP EAETKQQSLK LFGKTFVVGD YNSWTSSNDS EDVKKMSDLE 240 TLSVRCTSSS SSSENAGTEL TQQVVVVVVS EEFKRSERSA FSQLKSSAIA MKNMKGFMPY 300 KKRMKVEENI DSLVKTSYPM W* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator for cold-responsive gene expression and cold tolerance. Part of a regulatory feedback loop that controls a subset of the circadian outputs and modulates the central oscillator. Negatively self-regulates its own expression. {ECO:0000269|PubMed:17587236, ECO:0000269|PubMed:23371945}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00036781001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Up-regulated transiently by light. {ECO:0000269|PubMed:17587236, ECO:0000269|PubMed:19805390}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013588463.1 | 0.0 | PREDICTED: protein REVEILLE 2 | ||||
Refseq | XP_013687458.1 | 0.0 | protein REVEILLE 2-like | ||||
Swissprot | F4K5X6 | 1e-151 | RVE2_ARATH; Protein REVEILLE 2 | ||||
TrEMBL | A0A078GP87 | 0.0 | A0A078GP87_BRANA; BnaC06g12130D protein | ||||
STRING | Bo6g057640.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14432 | 19 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37260.1 | 1e-132 | MYB_related family protein |
Publications ? help Back to Top | |||
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