PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00035028001
Common NameGSBRNA2T00035028001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 184aa    MW: 21476.1 Da    PI: 8.2777
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00035028001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.14e-101538427
                         ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                         + C+f++rtG C yG++C+++H++
  GSBRNA2T00035028001 15 KDCQFYLRTGRCGYGENCCYNHPK 38
                         68********************96 PP
2zf-CCCH23.78.5e-084870427
                         ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                         + C+ff+r G Ck G+ C F H++
  GSBRNA2T00035028001 48 PKCKFFLR-GKCKNGSHCDFDHSK 70
                         78******.*************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2491139IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-51138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-61339IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-81538IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-51739IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.7464471IPR000571Zinc finger, CCCH-type
SMARTSM003560.00174470IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-64669IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-54770IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-45071IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MMVESSEYPV RPGIKDCQFY LRTGRCGYGE NCCYNHPKET PRGKINMPKC KFFLRGKCKN  60
GSHCDFDHSK EGDRAEHTRQ GQKRYRTEST SRSSPSPEKR GDIEKQKTEA EDIPQGEKLR  120
EMQENDNDQQ KLVEQRKRDI ERQRREARLS LEQIKPTVYF DEAIRIREIL AEFGFIHTEG  180
DGL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00035028001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022547471.11e-132putative zinc finger CCCH domain-containing protein 10
TrEMBLA0A078GM901e-133A0A078GM90_BRANA; BnaA09g26730D protein
STRINGBra032327.1-P1e-127(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15746914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-17C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]