PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00034196001
Common NameGSBRNA2T00034196001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 201aa    MW: 22114 Da    PI: 8.2095
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00034196001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.97.5e-2093127135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++C tt+TplWR+gp g+k+LCnaCG++++k+++
  GSBRNA2T00034196001  93 CASCDTTSTPLWRNGPKGPKSLCNACGIRFKKEER 127
                          ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.46887123IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.47E-1387127No hitNo description
SMARTSM004012.9E-1987139IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.1E-1791127IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.46E-1392124No hitNo description
PROSITE patternPS00344093118IPR000679Zinc finger, GATA-type
PfamPF003201.7E-1793127IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MMGYQTNPNF SMFFSLENND QNNQDYNSYN SLSSSTSVDC TLSLGTPSTR LDDHRRYSSV  60
SSNMSGDYFY HGGSAKTTSY KKGGGDHNLP RRCASCDTTS TPLWRNGPKG PKSLCNACGI  120
RFKKEERRAA ARNSITSVGG SSAAEIPAGG NYYNHHHHYP SSSPSWAHQN TQRVQYFSPA  180
PEMEYPFVDD ATAASFLSWN *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00034196001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102248.11e-148PREDICTED: GATA transcription factor 20-like
RefseqXP_013651431.11e-148GATA transcription factor 20-like
SwissprotQ9ZPX01e-102GAT20_ARATH; GATA transcription factor 20
TrEMBLA0A078K1471e-148A0A078K147_BRANA; BnaA07g36170D protein
STRINGBo7g010220.11e-136(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61591746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.12e-88GATA transcription factor 20
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]