PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00032910001
Common NameGSBRNA2T00032910001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 323aa    MW: 36196.3 Da    PI: 7.1386
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00032910001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.6e-12147193455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h  +Er+RR+++ ++f  L   +P +     kK++Ka++L  A+++Ik+Lq
  GSBRNA2T00032910001 147 DHILAERKRREKLTQRFVALSAQIPGL-----KKMDKASVLGDAIKHIKYLQ 193
                          5899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.072143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.7E-10147193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16147209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.87E-12148197No hitNo description
SuperFamilySSF474592.22E-16148212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-14149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MATTMNVFST KWSSEMDIEE YSIIHQYHMN SFLGDFPQSL SSLDDTTTCY NIDASCDDDL  60
LEEKPSKILK TTHVLPKLHP CPTYNPPPQS QPPSRILSFE KTGLKVMNHN SPNLIFSPKK  120
EVGSPDQITR GTKRAQPLTR SQSNAQDHIL AERKRREKLT QRFVALSAQI PGLKKMDKAS  180
VLGDAIKHIK YLQESVKEYE EQKKERTMES MVLVKKSQLV LDENYQLSSS SSDGNRDCSS  240
SNLPEMEVRV SGNDVLIKIL CEKQNCNLIK IMSEVEKLGL SITNSSVLPF GPTFDISIIS  300
QKTSNFDMKV EDLVKSLSCG LS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151156ERKRRE
2152157RKRREK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00032910001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4465490.0DQ446549.1 Arabidopsis thaliana clone pENTR221-At2g22750 basic helix-loop-helix family protein (At2g22750) mRNA, complete cds.
GenBankDQ6530150.0DQ653015.1 Arabidopsis thaliana clone 0000017319_0000012121 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140386.10.0PREDICTED: transcription factor bHLH18
SwissprotQ1PF171e-145BH018_ARATH; Transcription factor bHLH18
TrEMBLA0A078GM010.0A0A078GM01_BRANA; BnaA04g13200D protein
STRINGBra030210.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.21e-144bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]